[Psidev-pi-dev] Issue 42 in psi-pi: Issues with the CV

[<cod...@go...>]

Comment #92 on issue 42 by eisenachM: Issues with the CV
http://code.google.com/p/psi-pi/issues/detail?id=42

I checked some (from MS:100100X to approx. MS:1001051) CV terms and found  
some errors:

very many CV terms have no "[PSI:PI]" after the definition.
Is it necessary?

MS:1001420, SpectraST:delta:
wrongly spelled: "[:PSI-PI]" instead of "[PSI:PI]"

MS:1001007, sequest:Output lines:
value type missing (xsd:nonNegativeInteger ?)

MS:1001014, database local file path:
value type xsd:string is missing

MS:1001016, database version:
value type xsd:string is missing
There is a "version" attribute in the <Searchdatabase> element.
One of both is not necessary.

MS:1001017, database release date:
value type xsd:string is missing
There is a "releaseDate" attribute in the <Searchdatabase> element.
One of both is not necessary.

MS:1001019, database filtering:
In the definition, what does "public or private" mean?

MS:1001020, DB filter taxonomy:
def should be changed: "A taxonomy filter was applied to the search  
database." [PSI:PI]

MS:1001024, translation frame:
value type is missing
In the Mascot NA example, a <DatabaseTranslation> element is used,
using a "frames" attribute. Is the CV term obsolete?

MS:1001028, sequest:SequenceHeaderFilter:
value type missing (xsd:string ?)

MS:1001032, sequest:SequencePartialFilter:
value type missing (xsd:string ?)

MS:1001035, date / time search performed:
value type missing (xsd:dateTime)
The <SpectrumIdentification> element has an "activityDate" attribute.
One of both is not necessary.

MS:1001037, sequest:ShowFragmentIons:
value type missing (xsd:boolean)

MS:1001038, sequest:Consensus:
value type missing (xsd:positiveInteger)

MS:1001051, multiple enzyme combination rules:
value type missing (xsd:string ?)
The term is not referenced in the mapping file (nor is cleavage agent  
details, its
parent).
Additionally the <Enzyme> element has an "independent" attribute.
Can this CV term be deleted?



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