[Psidev-pi-dev] Issue 42 in psi-pi: Issues with the CV

[<cod...@go...>]

Comment #86 on issue 42 by eisenachM: Issues with the CV
http://code.google.com/p/psi-pi/issues/detail?id=42

When correcting the MPC example it became obvious that some CV terms are  
missing:

[Term]
id: MS:1001XXX
name: ProteinScape:SearchResultId
def: "The SearchResultId of this peptide as SearchResult in the  
ProteinScape database."
xref: value-type:xsd\:positiveInteger "The allowed value-type for this CV  
term."
is_a: MS:1001143 ! search engine specific score for peptides
is_a: MS:1001153 ! search engine specific score

[Term]
id: MS:1001XXX
name: ProteinScape:SearchEventId
def: "The SearchEventId of the SearchEvent in the ProteinScape database."
xref: value-type:xsd\:positiveInteger "The allowed value-type for this CV  
term."
is_a: MS:1001143 ! search engine specific score for peptides
is_a: MS:1001153 ! search engine specific score

[Term]
id: MS:1001XXX
name: ProteinScape:ProfoundProbability
def: "The Profound probability score stored by ProteinScape."
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! search engine specific score for peptides
is_a: MS:1001153 ! search engine specific score

[Term]
id: MS:1001XXX
name: Profound:z value
def: "The Profound z value."
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! search engine specific score for peptides
is_a: MS:1001153 ! search engine specific score
	
[Term]
id: MS:1001XXX
name: Profound:Cluster
def: "The Profound cluster score."
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! search engine specific score for peptides
is_a: MS:1001153 ! search engine specific score
	
[Term]
id: MS:1001XXX
name: Profound:ClusterRank
def: "The Profound cluster rank."
xref: value-type:xsd\:positiveInteger "The allowed value-type for this CV  
term."
is_a: MS:1001143 ! search engine specific score for peptides
is_a: MS:1001153 ! search engine specific score
	
[Term]
id: MS:1001XXX
name: MSFit:Mowse score
def: "The MSFit Mowse score."
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! search engine specific score for peptides
is_a: MS:1001153 ! search engine specific score
	
[Term]
id: MS:1001XXX
name: Sonar:Score
def: "The Sonar score."
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! search engine specific score for peptides
is_a: MS:1001153 ! search engine specific score

[Term]
id: MS:1001XXX
name: ProteinScape:PFFSolverExp
def: "The ProteinSolver exp value stored by ProteinScape."
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! search engine specific score for peptides
is_a: MS:1001153 ! search engine specific score
	
[Term]
id: MS:1001XXX
name: ProteinScape:PFFSolverScore
def: "The ProteinSolver score stored by ProteinScape."
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! search engine specific score for peptides
is_a: MS:1001153 ! search engine specific score
	
[Term]
id: MS:1001XXX
name: ProteinScape:IntensityCoverage
def: "The intensity coverage of the identified peaks in the spectrum  
calculated by
ProteinScape."
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! search engine specific score for peptides
is_a: MS:1001153 ! search engine specific score
	
[Term]
id: MS:1001XXX
name: ProteinScape:SequestMetaScore
def: "The Sequest meta score calculated by ProteinScape from the original  
Sequest
scores."
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! search engine specific score for peptides
is_a: MS:1001153 ! search engine specific score

[Term]
id: MS:1001XXX
name: ProteinExtractor:Score
def: "The score calculated by ProteinExtractor."
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001116 ! single protein result details
is_a: MS:1001153 ! search engine specific score


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