Re: [Psidev-ms-dev] PSI-MSS WG Tuesday call reminder

[Eric D. <ede...@sy...>]

Present: Marc, Jim, Matt, Eric, Lennart, Pierre-Alain

 

1) mzML 1.1.0

- Released!

+ The whitespace issue in the xsd resolved before

- Allowed binarydata data types

+ Add back in 32- and 64-bit integer. Those terms should be unobsoleted.
There were there

+ Add string array: null-terminated array of strings. Must have as many
nulls as elements.

+ Matt will add these to the CV

+ It will be implemented somehow in ProteoWizard and OpenMS

+ Matt will added another CV type which is binarydatatype and then annotated
mzArray, IntensityArray, and chargeArray with the appropriate types

- ASMS

+ There is a group that just put together a “unified” format for ion
mobility mass spec. Matt and Eric met him, and we will followup

+ Also had discussion with ANiML. Being done through ASTM

- ASMS might help out with CV

+ David Sparkman may help us out.

+ Eric will update MSS WG page

+ Eric will email Juan Antonio about top page

+ Marc will double check with Andreas Römpp on units addition and then add
them as is

 

2) TraML development

- Feedback from ASMS

- Implementations

+ ProteoWizard has some implementation. OpenMS does as well by Andreas. Jim
is working on something

- cvParams vs attributes

+ Problem with attributes is lack on units specification

+ Problem with attributes is default value ambiguity in C++

+ change transition name to id of type xsd:string

+ Apply rule: any attribute that is not an id or a Ref should be switched to
cvParam

+ How does mzIdentML handle b9-18^2 ? Try to do he same?

+ What about string values?

+ Matt is advocating more cvParams, Pierre-Alain as well. Jim as well.

+ Make normalizationStandard should be cvParams H-PINS

+ Eric will make another rev beased on this.

 

+ Meet again next week same time

 

 

  _____  

From: Eric Deutsch [mailto:ede...@sy...] 
Sent: Monday, June 08, 2009 3:41 PM
To: 'Mass spectrometry standard development'
Cc: 'Eric Deutsch'
Subject: PSI-MSS WG Tuesday call reminder

 

Hi everyone, the next PSI Mass Spectrometry Standards Working Group call
will be Tuesday 8am PDT:

 

http://www.timeanddate.com/worldclock/fixedtime.html?day=09
<http://www.timeanddate.com/worldclock/fixedtime.html?day=09&month=6&year=20
09&hour=16&min=0&sec=0&p1=136> &month=6&year=2009&hour=16&min=0&sec=0&p1=136

 

08:00 San Francisco

11:00 New York

16:00 London

17:00 Geneva

 

+ Germany: 08001012079

+ Switzerland: 0800000860

+ UK: 08081095644

+ USA: 1-866-314-3683

Generic international: +44 2083222500 (UK number)

 

access code: 297427

 

Agenda:

 

1) mzML 1.1.0

- Released!

- Allowed binarydata data types

- 

 

2) TraML development

- Feedback from ASMS

- Implementations

- cvParams vs attributes