Re: [Psidev-ms-dev] Problem parsing mzML.xsd RC6, with patch

[Steffen N. <sne...@ip...>]

Hi,

Has this been fixed ?

Yours,
Steffen

On Thu, 2009-05-28 at 22:32 +0200, Steffen Neumann wrote:
> Hi,
> 
> I tried to create an Eclipse EMF model 
> from the mzML RC6 XSD. 
> 
> I haven't found out how to cut&paste the full error, 
> therefor these two screenshots :-(
> 
> The problem are extra spaces " " in the xpath expressions:
> 
> 	<xs:selector xpath=".//dx:precursor |.//dx:scan" />
> 	                                   ^^
> below is a patch which cleans those up.
> 
> Yours,
> Steffen
> 
> 
> 
> --- mzML1.1.0.xsd	2009-05-28 22:25:33.000000000 +0200
> +++ mzML1.1.0clean.xsd	2009-05-28 22:31:05.000000000 +0200
> @@ -1029,7 +1029,7 @@
>            This is a reference to a source file in sourceFileList. It ensures that an id is present in the file and is one of the values defined in KEY_SOURCEFILE_ID.
>          </xs:documentation>
>        </xs:annotation>
> -      <xs:selector xpath=".//dx:precursor |.//dx:scan" />
> +      <xs:selector xpath=".//dx:precursor|.//dx:scan" />
>        <xs:field xpath="@sourceFileRef" />
>      </xs:keyref>
>      <xs:keyref name="KEYREF_RUN_SAMPLEREF" refer="dx:KEY_SAMPLE_ID">
> @@ -1056,7 +1056,7 @@
>            This is a reference to a data processing element in dataProcessingList. It ensures that an id is present in the file and is one of the values defined in KEY_DP_ID.
>          </xs:documentation>
>        </xs:annotation>
> -      <xs:selector xpath="./dx:run/dx:spectrumList |./dx:run/dx:chromatogramList" />
> +      <xs:selector xpath="./dx:run/dx:spectrumList|./dx:run/dx:chromatogramList" />
>        <xs:field xpath="@defaultDataProcessingRef" />
>      </xs:keyref>
>      <xs:keyref name="KEYREF_DPREF" refer="dx:KEY_DP_ID">
> @@ -1065,7 +1065,7 @@
>            This is a reference to a data processing element in dataProcessingList. It ensures that an id is present in the file and is one of the values defined in KEY_DP_ID.
>          </xs:documentation>
>        </xs:annotation>
> -      <xs:selector xpath=".//dx:spectrum |.//dx:chromatogram |.//dx:binaryDataArray" />
> +      <xs:selector xpath=".//dx:spectrum|.//dx:chromatogram|.//dx:binaryDataArray" />
>        <xs:field xpath="@dataProcessingRef" />
>      </xs:keyref>
>      <xs:keyref name="KEYREF_CVREF" refer="dx:KEY_CV_ID">
> @@ -1083,7 +1083,7 @@
>            This is a reference to the CV in cvList used for unit terms. It ensures that an id is present in the file and is one of the values defined in KEY_CV_ID.
>          </xs:documentation>
>        </xs:annotation>
> -      <xs:selector xpath=".//dx:cvParam |.//dx:userParam" />
> +      <xs:selector xpath=".//dx:cvParam|.//dx:userParam" />
>        <xs:field xpath="@unitCvRef" />
>      </xs:keyref>
>      <xs:keyref name="KEYREF_RPGREF" refer="dx:KEY_RPG_ID">
> @@ -1101,7 +1101,7 @@
>            This is a reference to an instrument configuration in instrumentConfigurationList. It ensures that an id is present in the file and is one of the values defined in KEY_IC_ID.
>          </xs:documentation>
>        </xs:annotation>
> -      <xs:selector xpath="./dx:run/dx:spectrumList |./dx:run/dx:chromatogramList" />
> +      <xs:selector xpath="./dx:run/dx:spectrumList|./dx:run/dx:chromatogramList" />
>        <xs:field xpath="@defaultInstrumentConfigurationRef" />
>      </xs:keyref>
>      <xs:keyref name="KEYREF_ICREF" refer="dx:KEY_IC_ID">
> 
> ------------------------------------------------------------------------------
> Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT 
> is a gathering of tech-side developers & brand creativity professionals. Meet
> the minds behind Google Creative Lab, Visual Complexity, Processing, & 
> iPhoneDevCamp as they present alongside digital heavyweights like Barbarian 
> Group, R/GA, & Big Spaceship. http://p.sf.net/sfu/creativitycat-com 
> _______________________________________________ Psidev-ms-dev mailing list Psi...@li... https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev