[Psidev-ms-dev] PSI-MSS WG Tuesday call notes

[Eric D. <ede...@sy...>]

Present: Matt, Jim, Marc, Eric, Darren

 

Topics:

 

- Address latest issues

- Wilfred's issue of <product> needs <selectIonList>

+ Eric will contact Wilfred and Fredrik and Matt. Must come up with an
example use case

+ Eric will update the mapping file per Wilfred's suggestion

 

- Example files updated?

+ Matt and Darren will update the examples today

+ Marc added volt per meter to the electric field strength to CV

 

- Submit!

- A few straggling unit issues from Marc

+ Orbitrap units should just be number of counts

+ Darren will go ahead and create one example file requested by Marc with 6
spectra all encoded in the six different possible datatypes and post it.

 

- Next call? March 17?

+Yes, if needed 8am PDT.

 

 

 

 

 

 

  _____  

From: Eric Deutsch [mailto:ede...@sy...] 
Sent: Tuesday, March 03, 2009 8:55 AM
To: 'Mass spectrometry standard development'
Cc: 'Eric Deutsch'
Subject: PSI-MSS WG Tuesday call notes

 

Present: Matt, Fredrik, Eric, Jim, Darren, 

 

Topic:

- Decision of where to put nativeID format <cvParam>

+ Adopt Darren's suggestion of 2/26 3:44p: always only specify nativeID
format in <sourceFile> and use

  "no id format" term is N/A

+ Eric make sure documentation says what to do with a folder of files: each
file included as source files

+ Darren will adjust the example files

+ Eric will add the CV term & email Darren

+ Eric will adjust mapping file

- Decision on sourceFileRefList

+ Remove <sourceFileRefList> element and below

+ Add <run> attribute defaultSourceFileRef=

+ Document that in the case of multiple files in a folder, or wiff &
wiff.scan, specify the key file (wiff, func001.dat, analysis.yep)

+ Can specify all files as <sourceFiles> at the top, but only reference the
key one.

+ Matt will make the xsd changes and check in and email Eric

+ Darren will update examples & email Eric

+ Eric will update the Documentation with latest schema and also rules about
which file to reference

- Example files updated?

+ Darren will update and post

+ Fredrik will update and post

- Ready to submit?

+ When these things are done, then Eric will submit

- A few straggling unit issues from Marc

+ Darren will ask Jim directory about orbi/FT intensitities

+ Defer rest until next week

- Next call? March 10?

+ Yes. Probably 8am PST March 10

 

 

 

 

 

 

  _____  

From: Eric Deutsch [mailto:ede...@sy...] 
Sent: Monday, March 02, 2009 5:15 PM
To: 'Mass spectrometry standard development'
Cc: 'Eric Deutsch'
Subject: PSI-MSS WG Tuesday call reminder

 

Hi everyone, the next PSI Mass Spectrometry Standards Working Group call
will be Tuesday 8am PST:

 

(this is back to our regular time. I don't *think* there's a conflict with
PSI SG)

 

http://www.timeanddate.com/worldclock/fixedtime.html?day=3
<http://www.timeanddate.com/worldclock/fixedtime.html?day=3&month=3&year=200
9&hour=16&min=0&sec=0&p1=136> &month=3&year=2009&hour=16&min=0&sec=0&p1=136

 

08:00 San Francisco

11:00 New York

16:00 London

17:00 Western Europe

 

+ Germany: 08001012079

+ Switzerland: 0800000860

+ UK: 08081095644

+ USA: 1-866-314-3683

Generic international: +44 2083222500 (UK number)

 

access code: 297427

 

Agenda:

- Decision of where to put nativeID format <cvParam>

- Decision on sourceFileRefList

- Example files updated?

- Ready to submit?

- A few straggling unit issues from Marc

- Next call? March 10?