Re: [Psidev-ms-dev] PSI-MSS WG Tuesday call notes

[Fredrik L. <Fre...@im...>]

The peak list file examples and the scan type examples are now updated 
with native ID type for source files, removal of the sourceFileRefList, 
and addition of defaultSourceFileRef. Not validated with new mapping 
file yet, though.

Fredrik

Eric Deutsch wrote:
>
> Present: Matt, Fredrik, Eric, Jim, Darren,
>
>  
>
> Topic:
>
> - Decision of where to put nativeID format <cvParam>
>
> + Adopt Darren’s suggestion of 2/26 3:44p: always only specify 
> nativeID format in <sourceFile> and use
>
>   “no id format” term is N/A
>
> + Eric make sure documentation says what to do with a folder of files: 
> each file included as source files
>
> + Darren will adjust the example files
>
> + Eric will add the CV term & email Darren
>
> + Eric will adjust mapping file
>
> - Decision on sourceFileRefList
>
> + Remove <sourceFileRefList> element and below
>
> + Add <run> attribute defaultSourceFileRef=
>
> + Document that in the case of multiple files in a folder, or wiff & 
> wiff.scan, specify the key file (wiff, func001.dat, analysis.yep)
>
> + Can specify all files as <sourceFiles> at the top, but only 
> reference the key one.
>
> + Matt will make the xsd changes and check in and email Eric
>
> + Darren will update examples & email Eric
>
> + Eric will update the Documentation with latest schema and also rules 
> about which file to reference
>
> - Example files updated?
>
> + Darren will update and post
>
> + Fredrik will update and post
>
> - Ready to submit?
>
> + When these things are done, then Eric will submit
>
> - A few straggling unit issues from Marc
>
> + Darren will ask Jim directory about orbi/FT intensitities
>
> + Defer rest until next week
>
> - Next call? March 10?
>
> + Yes. Probably 8am PST March 10
>
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> ------------------------------------------------------------------------
>
> *From:* Eric Deutsch [mailto:ede...@sy...]
> *Sent:* Monday, March 02, 2009 5:15 PM
> *To:* 'Mass spectrometry standard development'
> *Cc:* 'Eric Deutsch'
> *Subject:* PSI-MSS WG Tuesday call reminder
>
>  
>
> Hi everyone, the next PSI Mass Spectrometry Standards Working Group 
> call will be Tuesday 8am PST:
>
>  
>
> (this is back to our regular time. I don’t **think** there’s a 
> conflict with PSI SG)
>
>  
>
> http://www.timeanddate.com/worldclock/fixedtime.html?day=3&month=3&year=2009&hour=16&min=0&sec=0&p1=136 
> <http://www.timeanddate.com/worldclock/fixedtime.html?day=3&month=3&year=2009&hour=16&min=0&sec=0&p1=136>
>
>  
>
> 08:00 San Francisco
>
> 11:00 New York
>
> 16:00 London
>
> 17:00 Western Europe
>
>  
>
> + Germany: 08001012079
>
> + Switzerland: 0800000860
>
> + UK: 08081095644
>
> + USA: 1-866-314-3683
>
> Generic international: +44 2083222500 (UK number)
>
>  
>
> access code: 297427
>
>  
>
> Agenda:
>
> - Decision of where to put nativeID format <cvParam>
>
> - Decision on sourceFileRefList
>
> - Example files updated?
>
> - Ready to submit?
>
> - A few straggling unit issues from Marc
>
> - Next call? March 10?
>
>  
>