Re: [Psidev-ms-dev] PSI-MSS WG Tuesday call minutes

[Matthew C. <mat...@va...>]

Here are the minutes from today's call:

Any remaining open schema items?
- new subschema for component list
- remove number attribute from scan

New MGF terms and MGF-related terms
- fine to include overlapping terms with PSI-PI
- keep names the same, relations and definitions need to improve

Contact terms required? Basic? MIAPE?
- basic: if contact element included, at least name and organization
- MIAPE: must include contact element, at least name and organization

Must we specify CID/ETD?
- allow multiple dissociation methods
- require at least the base term (to specify unknown method)
- in case of EI where precursor-independent activation is provided by 
the ion source, the ion source itself will imply that activation

Precursor ion spectrum/Neutral loss spectrum support
- [Marc|Wilfred|Frederick] will produce an example for these types (I 
forgot who exactly offered to do this)

Unknown term discussion
- get rid of MS1? what does MSn mean?
- discuss spectrum type possibilities on list
- Spectrum representation: allow base term

Zoom/full spectrum
- zoom term goes to spectrum and becomes binary (there or not there, no 
more full scan)
- scan window and resolution describe the scanning method quantitatively

Post from metabolomics person Richard Scheltema
- mzML doesn't support more than one run
- possible support for 2d chromatograms in 1.2; Richard offered to put 
together a proposal

Next call? 23rd?
- Yes: Eric, Matt, and Jim offer to be there


Issue tracker: 
https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse

-Matt


Eric Deutsch wrote:
>
> Hi everyone, the next PSI Mass Spectrometry Standards Working Group 
> call will be Tuesday 8am PST:
>
>  
>
> http://www.timeanddate.com/worldclock/fixedtime.html?day=09&month=12&year=2008&hour=16&min=0&sec=0&p1=136 
> <http://www.timeanddate.com/worldclock/fixedtime.html?day=09&month=12&year=2008&hour=16&min=0&sec=0&p1=136>
>
>  
>
> + Germany: 08001012079
>
> + Switzerland: 0800000860
>
> + UK: 08081095644
>
> + USA: 1-866-314-3683
>
> Generic international: +44 2083222500 (UK number)
>
>  
>
> access code: 297427
>
>  
>
> Agenda:
>
>  
>
> - Any remaining open schema items?
>
> - New MGF terms
>
> - MGF-related terms
>
> - Contact terms required? Basic? MIAPE?
>
> - Must we specify CID/ETD?
>
> - Post from metabolomics person Richard Scheltema
>
> - Issue tracker: 
> https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse 
> <https://sourceforge.net/tracker/?atid=1126041&group_id=65472&func=browse>
>
>  
>
> - Next call? 23rd?
>
>  
>
>  
>
>