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Re: [Psidev-pi-dev] To Do list...
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From: David C. <dc...@ma...> - 2008-12-15 18:13:02
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TODOs in the Mascot examples have been removed.<br>
I guess that the CAUTIONs in the MPC example should remain, so if you
could remove them manually from the doc that would be best<br>
- David<br>
<br>
Jones, Andy wrote:
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<div class="Section1">
<p class="MsoNormal">Hi all,<o:p></o:p></p>
<p class="MsoNormal">We are pretty close to submitting the specs but
there are
quite a few dependencies so to get everything finished we have a few
fixes to
do in order... Here is the to do list as I see it before I can put all
the
final docs together and submit:<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<ol style="margin-top: 0cm;" start="1" type="1">
<li class="MsoNormal" style="">Some fixes to the mapping file
(changing MAY to MUST for most entries for requirement level), except
(I think):<o:p></o:p></li>
<ol style="margin-top: 0cm;" start="1" type="a">
<li class="MsoNormal" style="">GenericMaterial: MAY (we’ll never
cover all options)<o:p></o:p></li>
<li class="MsoNormal" style="">include and exclude (filter) –
this looks like it’s not currently implemented to map to NCBI taxonomy
or NEWT. I guess this will be MAY?<o:p></o:p></li>
<li class="MsoNormal" style="">...psi-pi:SearchDatabase/psi-pi:DatabaseName/pf:cvParam–
SHOULD or MAY? (don’t think we will be able to include all database
names?)<o:p></o:p></li>
</ol>
<li class="MsoNormal" style="">Add CV term and example for
translation table URI<o:p></o:p></li>
<li class="MsoNormal" style="">Add CV term, mapping and example for
setting thresholds e.g. by global FDR<o:p></o:p></li>
<li class="MsoNormal" style="">Regenerate docs<o:p></o:p></li>
</ol>
<p class="MsoNormal" style="margin-left: 36pt;"><o:p> </o:p></p>
<p class="MsoNormal">There are still a couple of problems with
example files that
get picked up by the auto-generation script, eg. “CAUTION...” at
the top of the MPC example and several TODOs in the Mascot examples. I
can
manually remove these from the specs but it would be good to get these
fixed if
possible.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Cheers<o:p></o:p></p>
<p class="MsoNormal">Andy<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<pre class="moz-signature" cols="72">--
David Creasy
Matrix Science
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London W1U 7GB, UK
Tel: +44 (0)20 7486 1050
Fax: +44 (0)20 7224 1344
<a class="moz-txt-link-abbreviated" href="mailto:dc...@ma...">dc...@ma...</a>
<a class="moz-txt-link-freetext" href="http://www.matrixscience.com">http://www.matrixscience.com</a>
Matrix Science Ltd. is registered in England and Wales
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