Re: [Psidev-pi-dev] Minutes of Telecon. 11th December

[Andreas B. <be...@in...>]

Hi David, hi all,

> The Mascot examples have been updated and validate against the schema.
>
> Andreas, I'm not sure why, but I get this from the validator:
>
> Validation against the schema:
> Error at file Mascot_MSMS_example.axml, line 691, char 193 Message:
> attribute 'passThreshold' is not declared for element
> 'SpectrumIdentificationItem'
> But it is? I must be missing something subtle!
Sorry, the schema for validation was not up-to-date.

> Also, for PMF I get:
>
> Error: CV term used in invalid element: 'PI:00362 - number of unmatched
> peaks' at element
> '/AnalysisXML/DataCollection/AnalysisData/ProteinDetectionList/ProteinAmbig
>uityGroup/ProteinDetectionHypothesis' But I think I have put it in the
> correct place. Or maybe not...
You're right. I've updated the cv and added the parent PI:00116 "single 
protein result details".

All allowed terms for a specific location in the schema can be found at
"http://www-bs2.informatik.uni-
tuebingen.de/services/OpenMS/analysisXML/mapping_and_cv.html" everything which 
is not listed here, will probably not validate!

Best,
A.



-- 
Div. for Simulation of Biological Systems, WSI, University of Tuebingen
Room C322, Sand 14, 72076 Tuebingen, Germany
phone: +49-7071-29-70461 fax: +49-7071-29-5152
http://www-bs.informatik.uni-tuebingen.de