[Psidev-pi-dev] Issue 42 in psi-pi: Issues with the CV

[<cod...@go...>]

Comment #61 on issue 42 by eisenachM: Issues with the CV
http://code.google.com/p/psi-pi/issues/detail?id=42

Discussed/Solved in TeleCon 11th December:

Comment 38:
nativeID: change back to just using mzML 'id'? Andy to change doc

Comment 40:
- no Newt.obo: ignored in validator
- 2nd parent for Paragon scores: done during DocProc (Sean)

Comment 41:
- OBOEdit cannot handle UO import and relationship rows
=> use OBOEdit 2 beta
=> try relationship rows without colon

Comment 44:
- <SourceFile> and <pf:fileFormat> elements are not renamed
(URIs may point to a database "location")
- Martin to add CV term "data stored in database"

Comment 57:
- "use child terms only" is different to "use leaf terms only"
(because child can be internal, if it has children itself)
=> no mechanism to prevent
=> leave CV structure very simple
=> name internal nodes so that they are not being used "intuitively"

Comment 60 (decoy terms):
- Martin to do it like he suggested (instead of real+virtual: forward+decoy)


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