[Psidev-pi-dev] Issue 42 in psi-pi: Issues with the CV

[<cod...@go...>]

Comment #60 on issue 42 by eisenachM: Issues with the CV
http://code.google.com/p/psi-pi/issues/detail?id=42

Suggestion:
At the moment we have some CV terms below "quality estimation with decoy  
database",
which actually describe the pre-generated search database (like "decoy DB  
accession
regexp" or "decoy DB derived from ...").

We should move them below "search database details" as branch "decoy DB  
details"
together with "decoy DB generation algorithm", "decoy DB type"  
(e.g. "reverse",
"shuffle", "random") and "decoy DB composition" (e.g. "real+virtual"  
[formerly known
as "forward+reverse"] and "only virtual").

All this is for decoy searches using a pre-generated database.

Decoy approaches with no explicite decoy database (like Mascot Decoy?) need  
a new
term "quality estimation with implicite decoy" next to "quality estimation  
with decoy
DB" under "search input details".



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