[Psidev-pi-dev] Issue 42 in psi-pi: Issues with the CV

[<cod...@go...>]

Comment #47 on issue 42 by eisenachM: Issues with the CV
http://code.google.com/p/psi-pi/issues/detail?id=42

MPC_example.axml is an example using a protein decoy approach.
It lists ALL proteins of a ProteinDetectionAnalysis and reports the "local  
FDR" for
each protein in the score-sorted list.
[BTW: In the CV we have also "local FDR" for peptides and "pep:global FDR"  
and
"prot:global FDR", all as result values of an analysis.]

We need an INPUT parameter "prot:FDR threshold" or "pep:FDR threshold"  
(probably in
the branch "search input details"/"quality estimation method"), if we want  
to report
only the proteins below a specified FDR.


-- 
You received this message because you are listed in the owner
or CC fields of this issue, or because you starred this issue.
You may adjust your issue notification preferences at:
http://code.google.com/hosting/settings