From: <cod...@go...> - 2008-11-19 19:41:55
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Issue 42: Issues with the CV http://code.google.com/p/psi-pi/issues/detail?id=42 Comment #21 by dcreasy: For the mapping file, PI:00088 needs to be allowed under: SequenceCollection/DBSequence We seem to have two sets of fragment types. For example [Term] id: PI:00220 name: frag: y ion is_a: PI:00221 ! fragmentation information [Term] id: PI:00262 name: param: y ion is_a: PI:00066 ! ions series considered in search Maybe this is OK, but maybe we can just have one lot? For the params, also need: "TODO: Need CV terms for a-NH3 and also a - NH3 if a significant and fragment includes RKNQ"; "TODO: Need CV terms for a-H20 and a - H2O if a significant and fragment includes STED"; "TODO: Need CV terms for b-NH2 and also b - NH3 if b significant and fragment includes RKNQ" "TODO: Need CV terms for b-H20 and b - H2O if b significant and fragment includes STED"; "TODO: Need CV terms for y - NH3 and also y - NH3 if y significant and fragment includes RKNQ"; "TODO: Need CV terms for y - H20 and also y - H2O if y significant and fragment includes STED"; "TODO: Need CV terms for internal yb"; "TODO: Need CV terms for z+1 series"; "TODO: Need CV terms for z+2 series"; I think that this one shouldn't require any value: id: PI:00020 name: DB filter taxonomy def: "The taxonomy filter applied (if any) to the database search." [PSI:PI] xref: value-type:xsd\:string "The allowed value-type for this CV term." is_a: PI:00019 ! database filtering See the relevant section of: http://code.google.com/p/psi-pi/wiki/NotesForDocumentation -- You received this message because you are listed in the owner or CC fields of this issue, or because you starred this issue. You may adjust your issue notification preferences at: http://code.google.com/hosting/settings |