Re: [Psidev-pi-dev] Spec doc

[Martin E. <mar...@ru...>]

Hi all!
 
I made minor changes and medium-sized additions 
to the spec doc (with "Track Changes").
 
I hope, my svn commit does not conflict with someone's local
copy (then tell me for merging).
 
  Bye
   Martin
 
 
 
 
Von: Jones, Andy [mailto:And...@li...] 
Gesendet: Friday, October 17, 2008 12:34 PM
An: psi...@li...
Betreff: Re: [Psidev-pi-dev] Spec doc
 
Hi Eric,
 
This looks really good, thanks v much!
 
Not wanting to give you more work... but there's a few minor things to fix if you get a chance, should be fairly simple
I think:
 
-          Attributes - if required/optional is unspecified, currently "-" is shown. XSD default is optional - so
replace "-" with "optional".
-          The attributes and documentation for FuGE elements is not being extracted e.g. Organization. If this is a big
headache you could always generate a separate document for FuGElight and I'll manually compile them?
-          Documentation missing where elements have been referenced as sub-elements e.g. AnalysisSoftwareList -->
AnalysisSoftware and all references to FuGE elements of this type say "?!?"
 
Cheers
Andy
 
 
 
 
From: Eric Deutsch [mailto:ede...@sy...] 
Sent: 17 October 2008 07:43
To: psi...@li...
Subject: Re: [Psidev-pi-dev] Spec doc
 
Hi everyone, I updated the current draft of the on-line autogenerated schema docs to the latest svn. The result is at:
 
http://www.peptideatlas.org/tmp/AnalysisXML_working.html
 
It looks like the current mapping file is just a template without any term mappings themselves. Just as a test, I wrote
into the axml-mapping.xml file the mapping information for SearchType and it seemed to pull it out of the CV nicely:
 
http://www.peptideatlas.org/tmp/AnalysisXML_working.html#SearchType
 
The autogeneration pulls examples out of one file. I randomly chose Mascot_MSMS_example.axml. Is there a better instance
document to automatically pull examples out of?
 
Regards,
Eric
 
 
 
  _____  

From: Jones, Andy [mailto:And...@li...] 
Sent: Monday, October 13, 2008 7:07 AM
To: psi...@li...
Subject: [Psidev-pi-dev] Spec doc
 
Hi all,
 
A new version of the spec document has been uploaded by SVN (in the specification_document directory), and previous
versions have been put in a subfolder. I think the document is getting there... 
 
Main tasks still to do:
 
-          Finish section on use cases when we have finally agreed the list online and made all the example files.
-          Import some parts of the example files to demonstrate a few specific points
-          Import the autogenerated documentation
 
Before we can submit, the main outstanding issues are:
 
-          CV - looking through the CV there is still a fair bit of work to do, there's quite a few terms with missing
or incorrect documentation
-          Mapping file
-          Finish example files.
 
Prior to the call on Thurs, can we have a think about how we plan to get the CV into shape and discuss it as a main
agenda item...
 
Also new schema uploaded with a few bits of improved documentation.
Cheers
Andy