Re: [Psidev-pi-dev] enzyme definition

[Jones, A. <And...@li...>]

Hi all,

New schema updated:

- Moved numSequencesSearched to SpectrumIdentificationList
- Changed element SpectraData_ref and attribute ref to element: InputSpectra and attribute: SpectraData_ref
- Changed element SpectrumIdentificationList_ref to InputSpectrumIdentifications and attribute ref to SpectrumIdentificationList_ref
- Some documentation added

One minor problem was that the schema Martin uploaded yesterday evening was in conflict with my changes. I have re-added the changes below to my version and overwritten this. Going forward we should probably agree after each call who is going to make changes to the schema so we don't have different versions checked out at the same time.
Cheers
Andy




> -----Original Message-----
> From: Martin Eisenacher [mailto:mar...@ru...]
> Sent: 09 October 2008 17:31
> To: 'David Creasy'; psi...@li...
> Subject: Re: [Psidev-pi-dev] enzyme definition
> 
> Dear PSI-PI workers,
> 
> I committed minor schema changes (as agreed in TeleCon 9th of October):
> 
> 1) changed cardinality of <cvParam> child of <Enzyme> to: one to many (to allow
> synonyms)
> 
> 2) restricted CTermGain and NTermGain to "[A-Za-z0-9 ] (basic letters of a
> chemical formula) (can be refined later)
> 
>   Bye
>    Martin
> 
> > -----Ursprüngliche Nachricht-----
> > Von: David Creasy [mailto:dc...@ma...]
> > Gesendet: Wednesday, October 08, 2008 7:02 PM
> > An: psi...@li...
> > Betreff: Re: [Psidev-pi-dev] enzyme definition
> >
> > Hi Martin,
> >
> > No, they've not been added to the CV yet. There are still a couple of
> > unresolved issues at:
> >
> > http://code.google.com/p/psi-pi/issues/detail?id=30#c30
> >
> > Any comments welcome, and then we can add to the CV and sign off this issue.
> >
> > David
> >
> > Martin Eisenacher wrote:
> > > Hi Angel, hi David,
> > >
> > > I've seen some progress on the CV terms for common enzymes
> > > including some OBO lines from Angel in the issue list.
> > >
> > > But the svn obo file seems to be unchanged.
> > > Or have you changed the location?
> > >
> > > Would be great to use it in some examples...
> > >
> > >  Bye
> > >    Martin
> > >
> > >
> >
> > --
> > David Creasy
> > Matrix Science
> > 64 Baker Street
> > London W1U 7GB, UK
> > Tel: +44 (0)20 7486 1050
> > Fax: +44 (0)20 7224 1344
> >
> > dc...@ma...
> > http://www.matrixscience.com
> >
> > Matrix Science Ltd. is registered in England and Wales
> > Company number 3533898
> >
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