From: David C. <dc...@ma...> - 2008-07-31 12:45:49
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Hi, I've added an example N15 Mascot search to: http://code.google.com/p/psi-pi/source/browse/#svn/trunk/examples/schema_usecase_examples/working29July This seems to work pretty well (as expected!!) The interesting thing is that there are two sets of residue masses, two SpectrumIdentificationList (one for light, one for heavy) but just one ProteinDetectionList. And (possibly confusing at first glance!) unmodified peptides with different masses like this: <Peptide id="peptide_48_1" sequenceMass="1025.481796" > <peptideSequence>STNLDWYK</peptideSequence> </Peptide> <Peptide id="peptide_53_1" sequenceMass="1036.449188"> <peptideSequence>STNLDWYK</peptideSequence> </Peptide> Any comments welcomed... -- David Creasy Matrix Science 64 Baker Street London W1U 7GB, UK Tel: +44 (0)20 7486 1050 Fax: +44 (0)20 7224 1344 dc...@ma... http://www.matrixscience.com Matrix Science Ltd. is registered in England and Wales Company number 3533898 |