Re: [Psidev-pi-dev] Changes to schema on 29th July 2008

[Jones, A. <And...@li...>]

Hi David,

 

There is also still a : 
<SpectrumIdentificationList_ref ref=...

 

Okay we should have a quick discussion about this on Thursday. The rule used in FuGE is that the element name is whatever you want, but the attribute that does the reference is called: objectBeingReferenced_ref – this way it is simple to write a parser to check that the correct element is referenced. I’m fairly sure we agreed to do this previously in a call, (although it’s less important if we have Key/KeyRefs), but I would have a slight preference to follow the rule.

 

I’ll make the other fixes later today,

Cheers

Andy

 

 

From: psi...@li... [mailto:psi...@li...] On Behalf Of David Creasy
Sent: 30 July 2008 05:00
To: psi...@li...
Subject: [Psidev-pi-dev] Changes to schema on 29th July 2008

 

Hi Andy,

Thanks for the recent changes to the schema. You asked a question:
Added            <xsd:attribute name="SearchDatabase_ref" type="xsd:string"/> to DBSequence and <xsd:attribute name="accession" type="xsd:string"/> should either/both of these be set as required?

I think that the answer has to be yes. However, in the MPC_use_case_working_temp.axml file, there is: SearchDatabase_ref="", so maybe Martin could comment?




And under
  <AnalysisCollection>
    <SpectrumIdentification ... >

you made the change from
      <SpectraData_ref id="SD_1"/>
      <SearchDatabase_ref id="SDB_SwissProt"/>
to 
      <SpectraData_ref ref="SD_1"/>
      <SearchDatabase SearchDatabase_ref="SDB_SwissProt"/>

which maybe isn't as consistent as you intended - or maybe I have missed the point?
There is also still a : 
<SpectrumIdentificationList_ref ref=...

cvList is fine, except it can only be a list of exactly 1 item at the moment... (I've not fixed the schema).

I didn't notice it last time, but the schema doesn't validate with xerces:
Need to change (in 2 places):
<xsd:pattern value="[ABCDEFGHIJKLMNOPQRSTUVWXYZ?-]{1}"/>
   to
<xsd:pattern value="[ABCDEFGHIJKLMNOPQRSTUVWXYZ?\-]{1}"/>
(I've not updated the schema in svn - or checked to see if xerces is correct).

Thanks,

David




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