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[Psidev-pi-dev] Changes to schema on 29th July 2008
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From: David C. <dc...@ma...> - 2008-07-30 03:59:55
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Hi Andy,<br>
<br>
Thanks for the recent changes to the schema. You asked a question:<br>
<span style="font-size: 11pt; font-family: Calibri;" lang="EN-GB">Added</span><span
style="font-size: 12pt; font-family: "Times New Roman"; color: black;"
lang="EN-GB"><span style=""> </span></span><span
style="font-size: 12pt; font-family: "Times New Roman"; color: rgb(0, 0, 150);"
lang="EN-GB"><xsd:attribute</span><span
style="font-size: 12pt; font-family: "Times New Roman"; color: rgb(245, 132, 76);"
lang="EN-GB"> name</span><span
style="font-size: 12pt; font-family: "Times New Roman"; color: rgb(255, 128, 64);"
lang="EN-GB">=</span><span
style="font-size: 12pt; font-family: "Times New Roman"; color: rgb(153, 51, 0);"
lang="EN-GB">"SearchDatabase_ref"</span><span
style="font-size: 12pt; font-family: "Times New Roman"; color: rgb(245, 132, 76);"
lang="EN-GB"> type</span><span
style="font-size: 12pt; font-family: "Times New Roman"; color: rgb(255, 128, 64);"
lang="EN-GB">=</span><span
style="font-size: 12pt; font-family: "Times New Roman"; color: rgb(153, 51, 0);"
lang="EN-GB">"xsd:string"</span><span
style="font-size: 12pt; font-family: "Times New Roman"; color: rgb(0, 0, 150);"
lang="EN-GB">/> </span><span
style="font-size: 11pt; font-family: Calibri;" lang="EN-GB">to
DBSequence and </span><span
style="font-size: 12pt; font-family: "Times New Roman"; color: rgb(0, 0, 150);"
lang="EN-GB"><xsd:attribute</span><span
style="font-size: 12pt; font-family: "Times New Roman"; color: rgb(245, 132, 76);"
lang="EN-GB"> name</span><span
style="font-size: 12pt; font-family: "Times New Roman"; color: rgb(255, 128, 64);"
lang="EN-GB">=</span><span
style="font-size: 12pt; font-family: "Times New Roman"; color: rgb(153, 51, 0);"
lang="EN-GB">"accession"</span><span
style="font-size: 12pt; font-family: "Times New Roman"; color: rgb(245, 132, 76);"
lang="EN-GB"> type</span><span
style="font-size: 12pt; font-family: "Times New Roman"; color: rgb(255, 128, 64);"
lang="EN-GB">=</span><span
style="font-size: 12pt; font-family: "Times New Roman"; color: rgb(153, 51, 0);"
lang="EN-GB">"xsd:string"</span><span
style="font-size: 12pt; font-family: "Times New Roman"; color: rgb(0, 0, 150);"
lang="EN-GB">/> </span><span
style="font-size: 11pt; font-family: Calibri;" lang="EN-GB">should
either/both of these be set as required?<u><br>
<br>
</u>I think that the answer has to be yes. However, in the
MPC_use_case_working_temp.axml file, there is: SearchDatabase_ref="",
so maybe Martin could comment?<br>
<br>
</span><br>
And under<br>
<small><small><tt><big><big> <AnalysisCollection><br>
<SpectrumIdentification ... ><br>
</big></big><br>
</tt></small></small>you made the change from<br>
<small><small><tt><big><big> <SpectraData_ref id="SD_1"/><br>
<SearchDatabase_ref id="SDB_SwissProt"/><br>
</big></big></tt></small></small>to <br>
<small><small><tt><big><big> <SpectraData_ref ref="SD_1"/><br>
<SearchDatabase SearchDatabase_ref="SDB_SwissProt"/><br>
</big></big></tt><big><big><br>
which maybe isn't as consistent as you intended - or maybe I have
missed the point?<br>
There is also still a : <br>
<SpectrumIdentificationList_ref ref=...<br>
<br>
cvList is fine, except it can only be a list of exactly 1 item at the
moment... (I've not fixed the schema).<br>
<br>
I didn't notice it last time, but the schema doesn't validate with
xerces:<br>
Need to change (in 2 places):<br>
</big></big></small></small><small><small><big><big><xsd:pattern
value="[ABCDEFGHIJKLMNOPQRSTUVWXYZ?-]{1}"/><br>
</big></big></small></small>to<br>
<small><small><big><big><xsd:pattern
value="[ABCDEFGHIJKLMNOPQRSTUVWXYZ?\-]{1}"/><br>
</big></big></small></small><small><small><big><big>(I've not updated
the schema in svn - or checked to see if xerces is correct).<br>
<br>
Thanks,<br>
<br>
David<br>
<br>
</big></big></small></small>
<pre class="moz-signature" cols="72">--
David Creasy
Matrix Science
64 Baker Street
London W1U 7GB, UK
Tel: +44 (0)20 7486 1050
Fax: +44 (0)20 7224 1344
<a class="moz-txt-link-abbreviated" href="mailto:dc...@ma...">dc...@ma...</a>
<a class="moz-txt-link-freetext" href="http://www.matrixscience.com">http://www.matrixscience.com</a>
Matrix Science Ltd. is registered in England and Wales
Company number 3533898</pre>
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