Re: [Psidev-ms-dev] Current mapping file

[Eric D. <ede...@sy...>]

Hi Marc, thanks for the feedback. I have added a direct link to this
file on the mzML information page, so it is easier to find. Thanks for
send the XSL file. We'll add that, too.

Lennart has reported that they have built a working validator at the
EBI, using their other new development, a stand-alone jmzML component
(minimal memory footprint Java object model for reading mzML), and that
they will soon release both, and he will email the list at that point.

Hopefully your comments and questions will be addressed as the new
version is released.

Thanks!
Eric


> -----Original Message-----
> From: psi...@li...
[mailto:psidev-ms-dev-
> bo...@li...] On Behalf Of Marc Sturm
> Sent: Monday, July 21, 2008 6:50 AM
> To: Mass spectrometry standard development
> Subject: Re: [Psidev-ms-dev] Current mapping file
> 
> Hi Matt and all others,
> 
> thanks for the up-to-date link.
> The other version I found is at:
> http://psidev.cvs.sourceforge.net/psidev/psi/psi-ms/mzML/schema/ms-
> mapping.xml?view=log
> 
> I have several questions/comments regarding the mapping file.
> 
> Comment 1:
> There is no mapping for the "/mzML/run" tag
> 
> Comment 2:
> There is no mapping for the
>
"/mzML/run/spectrumList/spectrum/spectrumDescription/precursorList/precu
rs
> or/isolationWindow"
> tag
> 
> Comment 3:
> There is no mapping for the "data processing parameter" terms
(MS:1000630)
> 
> Question 1:
> According to the mapping file the "ms level" term (MS:1000511) should
be
> under "spectrumDescription", but is under "spectrum" in the tiny1
example.
> Which one is right?
> 
> Best,
>   Marc
> 
> 
> P.S.:
> I attached a small XSL script I use to visualize the mapping file.
> Perhaps it it useful for others as well.
> You simply have to add the absolute path to the XSL script to the
> mapping, then you can visualize the file in a web browser:
> 
> <?xml version="1.0" encoding="UTF-8"?>
> <?xml-stylesheet type="text/xsl"
> href="file:///C:/Desktop/Projekte/OpenMS/PSI -
> mzML/Mapping/ms-mapping.xsl"?>
> ...