Re: [Psidev-ms-dev] list of TOPP tools that will support mzML

[Angel P. <an...@ma...>]

awesome. Is the parser pwiz based or your own code? -angel

On Fri, Jul 4, 2008 at 5:13 AM, Marc Sturm <
st...@in...> wrote:

> Hi all,
>
> attached is a list of TOPP tools that will be able to process mzML (as soon
> as we have a stable implementation).
> I guess a "TOPP software" subsection in the "software" section would be
> best.
>
> Thanks in advance to whoever adds our tools to the CV.
>
> Best,
>   Marc
>
> TOPP software -- TOPP (The OpenMS proteomics pipeline) software for mass
> spectrometry.
> |- BaselineFilter -- Removes the baseline from profile spectra using a
> top-hat filter.
> |- DBExporter -- Exports data from an OpenMS database to a file.
> |- DBImporter -- Imports data to an OpenMS database.
> |- FileConverter -- Converts between different MS file formats.
> |- FileFilter -- Extracts or manipulates portions of data from peak,
> feature or consensus feature files.
> |- FileMerger -- Merges several MS files into one file.
> |- InternalCalibration -- Applies an internal calibration.
> |- MapAligner -- Corrects retention time distortions between maps.
> |- MapNormalizer -- Normalizes peak intensities in an MS run.
> |- NoiseFilter -- Removes noise from profile spectra by using different
> smoothing techniques.
> |- PeakPicker -- Finds mass spectrometric peaks in profile mass spectra.
> |- Resampler -- Transforms an LC/MS map into a resampled map or a png
> image.
> |- SpectraFilter -- Applies a filter to peak spectra.
> |- TOFCalibration -- Applies time of flight calibration.
>
>
>
>
>