[Psidev-ms-dev] list of TOPP tools that will support mzML

[Marc S. <st...@in...>]

Hi all,

attached is a list of TOPP tools that will be able to process mzML (as soon as we have a stable implementation).
I guess a "TOPP software" subsection in the "software" section would be best.

Thanks in advance to whoever adds our tools to the CV.

Best,
   Marc

TOPP software -- TOPP (The OpenMS proteomics pipeline) software for mass spectrometry.
|- BaselineFilter -- Removes the baseline from profile spectra using a top-hat filter.
|- DBExporter -- Exports data from an OpenMS database to a file.
|- DBImporter -- Imports data to an OpenMS database.
|- FileConverter -- Converts between different MS file formats.
|- FileFilter -- Extracts or manipulates portions of data from peak, feature or consensus feature files.
|- FileMerger -- Merges several MS files into one file.
|- InternalCalibration -- Applies an internal calibration.
|- MapAligner -- Corrects retention time distortions between maps.
|- MapNormalizer -- Normalizes peak intensities in an MS run.
|- NoiseFilter -- Removes noise from profile spectra by using different smoothing techniques.
|- PeakPicker -- Finds mass spectrometric peaks in profile mass spectra.
|- Resampler -- Transforms an LC/MS map into a resampled map or a png image.
|- SpectraFilter -- Applies a filter to peak spectra.
|- TOFCalibration -- Applies time of flight calibration.