Re: [Psidev-pi-dev] Further work on example instance docs

[Martin E. <mar...@ru...>]

I added an issue called 
"minor schema changes we agreed to"
and added the three minor changes
discussed below...
(Hope, that all agree. ;-) )

 Bye
   Martin


> Maybe you could this to
>
http://code.google.com/p/psi-pi/issues/d
etail?id=27
> Or make a separate issue.
> 
> >
> >> Question:
> >> In ProteinDetermination, there is:
> >>
> <SpectrumIdentificationList_ref
> >> identifier="SIL_1"/>
> >> The SpectrumIdentificationList_ref
> >> isn't an attribute of
> >> ProteinDetermination because there
> >> could be more than one
> >> SpectrumIdentificationList?
> >> Assuming this is the case, then the
> >> identifier (SIL_1 in my example) is
> >> the reference? So somewhere else
> there
> >> will be:
> >> <SpectrumIdentificationList
> >> identifier="SIL_1" ...
> >>
> >> or have I misunderstood?
> > No, that is completely what was
> > intended.
> > That was, because a protein
> detection
> > may use the peptide pool of more
> > than one SpectrumIdentification,
> like:
> >
> > <ProteinDetermination
> >
> identifier="ProteinExtractor_analysis"
> >
> ProteinDeterminationProtocol_ref="Prot
> ei
> > nExtractor_proto"
> >
> ProteinDetectionResultList_ref="Protei
> nE
> > xtractor_results">
> > 	<SpectrumIdentificationList_ref
> > identifier="SEQUEST_results"/>
> > 	<SpectrumIdentificationList_ref
> > identifier="Mascot_results"/>
> > </ProteinDetermination>
> >
> > We could discuss to change it to
> > <SpectrumIdentificationList_ref
> > ref="SIL1""/>
> Yes, I think that would be clearer.