Re: [Psidev-pi-dev] Representing Sequences

[Pierre-Alain B. <pie...@is...>]

format-version: 1.0
date: 23:04:2008 10:40
saved-by: pab
auto-generated-by: OBO-Edit 1.101
default-namespace: PSI-DB
remark: When appropriate the definition and synonyms of a term are reported exactly as in the chapter 12 of IUPAC orange book. See http://www.iupac.org/projects/2003/2003-056-2-500.html.

[Term]
id: DB:0000001
name: Common Sequence Database Format Controlled Vocabulary
def: "Common Sequence Database Format Controlled Vocabulary." [PSI:DB]

[Term]
id: DB:0000002
name: File Header Section
def: "Common Sequence Database Format File Header Section."  [PSI:DB]
is_a: DB:0000001 ! CV root term

[Term]
id: DB:0000003
name: Individual Sequence Entry Section
def: "Common Sequence Database Format Individual Entry Section."  [PSI:DB]
is_a: DB:0000001 ! CV root term

[Term]
id: DB:0000004
name: DbName
def: "Sequence Database Name."  [PSI:DB]
is_a: DB:0000002 ! File Header Section term

[Term]
id: DB:0000005
name: Prefix
def: "Sequence Database Prefix."  [PSI:DB]
is_a: DB:0000002 ! File Header Section term

[Term]
id: DB:0000006
name: DbDescription
def: "Sequence Database Short description."  [PSI:DB]
is_a: DB:0000002 ! File Header Section term

[Term]
id: DB:0000007
name: Decoy
def: "Speciofies whether the Sequence Database is a Decoy."  [PSI:DB]
is_a: DB:0000002 ! File Header Section term

[Term]
id: DB:0000008
name: DbSource
def: "Source of the database file."  [PSI:DB]
is_a: DB:0000002 ! File Header Section term

[Term]
id: DB:0000009
name: DbVersion
def: "Database version (release date) according to database provider."  [PSI:DB]
is_a: DB:0000002 ! File Header Section term

[Term]
id: DB:0000010
name: DbDate
def: "Database date (release or file date of the source) according to database provider."  [PSI:DB]
is_a: DB:0000002 ! File Header Section term
is: obsolete

[Term]
id: DB:0000011
name: NumberOfEntries
def: "Number of sequence entries in the database."  [PSI:DB]
is_a: DB:0000002 ! File Header Section term

[Term]
id: DB:0000012
name: Conversion
def: "Description of the conversion from original format to this current one."  [PSI:DB]
is_a: DB:0000002 ! File Header Section term

[Term]
id: DB:0000013
name: SequenceType
def: "Molecular type of the sequences."  [PSI:DB]
is_a: DB:0000002 ! File Header Section term

[Term]
id: DB:0000014
name: SpecificKey
def: "Db specific information (not included in the current list of allowed keys)."  [PSI:DB]
is_a: DB:0000002 ! File Header Section term

[Term]
id: DB:0000015
name: SpecificValue
def: "DB specific values for a defined key."  [PSI:DB]
is_a: DB:0000002 ! File Header Section term

[Term]
id: DB:0001001
name: DbUniqueId
def: "Sequence Database unique indentifier."  [PSI:DB]
is_a: DB:0000003 ! Individual Entry Section term

[Term]
id: DB:0001002
name: PName
def: "Protein Name, description."  [PSI:DB]
is_a: DB:0000003 ! Individual Entry Section term

[Term]
id: DB:0001003
name: NcbiTaxId
def: "NCBI taxonomy identifier."  [PSI:DB]
is_a: DB:0000003 ! Individual Entry Section term

[Term]
id: DB:0001004
name: TaxName
def: "Taxonomy name (latin or common name)."  [PSI:DB]
is_a: DB:0000003 ! Individual Entry Section term

[Term]
id: DB:0001005
name: GName
def: "Gene name."  [PSI:DB]
is_a: DB:0000003 ! Individual Entry Section term

[Term]
id: DB:0001006
name: Length
def: "Sequence length."  [PSI:DB]
is_a: DB:0000003 ! Individual Entry Section term

[Term]
id: DB:0001007
name: SV
def: "Sequence version."  [PSI:DB]
is_a: DB:0000003 ! Individual Entry Section term

[Term]
id: DB:0001008
name: EV
def: "Entry version."  [PSI:DB]
is_a: DB:0000003 ! Individual Entry Section term

[Term]
id: DB:0001009
name: PE
def: "Protein Evidence; A UniprotKB code."  [PSI:DB]
is_a: DB:0000003 ! Individual Entry Section term

[Term]
id: DB:0001010
name: Processed
def: "Processed Molecule."  [PSI:DB]
is_a: DB:0000003 ! Individual Entry Section term

[Term]
id: DB:0001011
name: Variant
def: "Sequence variation (substitution, insertion, deletion)."  [PSI:DB]
is_a: DB:0000003 ! Individual Entry Section term

[Term]
id: DB:0001012
name: ModResPsi
def: "Modified residue with PSI-MOD identifier."  [PSI:DB]
is_a: DB:0000003 ! Individual Entry Section term

[Term]
id: DB:0001013
name: ModRes
def: "Modified residue without PSI-MOD identifier."  [PSI:DB]
is_a: DB:0000003 ! Individual Entry Section term

[Term]
id: DB:0001014
name: AltAC
def: "Alternative Accession Code."  [PSI:DB]
is_a: DB:0000003 ! Individual Entry Section term