Re: [Psidev-pi-dev] Updated schema

[Jones, A. <And...@li...>]

And if Phil wants to send round a suggestion for fragment ions, I'll add this to the schema on Monday

> -----Original Message-----
> From: psi...@li... [mailto:psidev-pi-dev-
> bo...@li...] On Behalf Of Jones, Andy
> Sent: 06 June 2008 15:57
> To: psi...@li...
> Subject: [Psidev-pi-dev] Updated schema
> 
> Hi all,
> 
> I've made a few edits to the schema as discussed on the call, and tidied up the
> SVN, so the main working version is the only file in the schema directory.
> 
> Changes:
> -	Altered cardinality of AnalysisCollection and AnalysisProtocolCollection to
> 1, since I think it should not be possible to create a file without any protocols or
> protocol applications (as least if there is a protocol application there must be a
> protocol). Let me know if anyone disagrees and I'll change it back
> -	Removed PolypeptideValuePropertyType and ValuePropertyType,
> Intensity, RetentionTime (think these were left over in the schema and not
> required)
> -	Put the AnalysisXML complexType first in the schema to make it easier to
> find.
> -	Worked thru schema and put in PropertyValue (value + unit +
> unitAccession) references instead of cvParam where sensible...
> - 	Added the option for userParam or cvParam by adding an abstract
> ParamType (changed over most of the references to ParamType, although I may
> have missed a few)
> -	Made TranslationTable cardinality 1, as suggested by Martin’s email
> 
> One minor problem. On the call we discussed using XSD style inheritance for
> cvParam, where an entity e.g. SearchType uses the cvParamType complexType.
> Unfortunately, this does not work with also using the other style of inheritance
> where you can give the option of a userParam or cvParam by giving a reference to
> an abstract superclass e.g. ParamType.
> 
> So... we either go back to the old style of having e.g.
> 
> <SearchType>
> 	<cvParam ...>
> 
> 
> Or we ditch the option of having cvParam or userParam as an option, and only
> user cvParam. We could for example make cvRef and accession optional, so a
> userParam is just a cvParam without the reference. I can give examples if I haven't
> explained this clearly enough.
> 
> Cheers
> Andy
> 
> 
> 
> 
> 
> 
> 
> 
> 
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