[Psidev-ms-dev] PSI-MSS WG call minutes

[Eric D. <ede...@sy...>]

Hi everyone, there are the minutes for the telecon of 2008-05-27.

 

Present: Matt, Darren, Eric, Lennart, Pierre-Alain, Jim

 

- schema

+ Discussed Matt's <precursor> issue 2008-05-26

+ Leave the schema as is? Have the semval require <precursor> in certain
cases?

+ Matt will try to make an example of putting the SRM precursor
information in <targetList> and refer to it

+ Document why checksum should be required.

+ Reply to Wilfred

+ Document that by default the validator doesn't allow anything beyond
what is listed in the mapping file

+ Stay at release 0.99.12 for now. Convert to 1.0.0 later this week when
ready.

 

- MIAPE example document?

+ Done except for switching criteria and parameters for creating
peaklists

+ Pierre-Alain and Jim will get together and finish this

+ State of MIAPE-MS

 

- CV status

+ Darren has sent a proposal for of datatype and relationship
"has_units"

+ OBO-Edit will write out all terms including imported terms unless told
not to

+ Figure out how to get OBO-Edit to write out "import" statements

+ Darren will email John Richter-Day about that

                               

- CV template updates to vendors

+ We have had pretty good response from vendors and Luisa is integrating

+ Okay to have some software organized by vendor

 

- documentation

+ Documentation is up to date

+ Lennart will regenerate embedded figures and send to Eric who will
update

 

- website

+ Eric will update web site for 0.99.12

+ Eric will update link from tiny1 to tiny-pwiz

+ Post the mapping file directly

 

- validator

+ Validator will be a little delayed. There are many back-end changes
due to the MI group

+ Does the validator check that if there is an acquisition list, then
there would be a combination type (like sum of spectra) provided?

 

- example files

+ Matt will take a stab at MALDI example

+ Remove tiny4 and point to "small" which includes LTQ-FT demo usage

+ Fredrik sent to Eric nice examples of dta -> mzML and plgs -> mzML.
Eric will post.

+ Matt will generate an example MGF -> mzML using pwiz and post

+ Jim will send Eric some example RAW files and converted files
(including PDA, SRM)

 

- ASMS

+ Eric will have a draft of a poster today and send out for folks to
look at

+ Jim will follow up with Mark about ASMS "Computer applications
interest group"

+ Try to plan for one night going out to dinner as a group Mon, Tue,
Wed. Jim can't due Tue.

+ Or a lunch

 

- Amsterdam

+ Pierre-Alain will do the presentation of the mzML talk during main
conference

+ PSI session during the congress at Sunday 17th 9:30a-12

+ Tentative presenter at PSI session is Jim Shofstahl with backups of
Randy and Pierre-Alain

 

- Open schema issue: where to put "centroided" and "deisotoped"

+ We will allow spectrum representation (like centroid/profile) in the
fileContent section

 

- Next call

+ Same time in two weeks