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[Psidev-ms-dev] Minutes from PSI-MSS WG call
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From: Eric D. <ede...@sy...> - 2008-04-29 16:56:00
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Hi everyone, here are the minutes from today's call. Please let me know if there are any errors or omissions. See the action items with your name on them. The next call will be in one week at the same time. We will discuss the progress made during the week. +Present: Lennart, Eric, Jim, Pierre-Alain, Darren, Agenda: - Problem of two <sourceFileList> places +Yes, just go to one sourceFileList in fileDescription - recursive referenceableParamGroup +Remove recursive possibilities - userParam required value and type attributes +Make value and type optional. Create some examples showing that type is a datatype +Add optional unitName and unitAccession - How will we organize CV editing? +Take off line with main CV coordinators - Use db_xref to add datatype and needs_units. Who will? Maybe Darren? +Lennart will update validator to handle this +Darren will update the CV for the datatypes and needs_units - Lennart will release schema 0.99.10 +Yes will do. - New mailing list psidev-ms-vocab for sending term (change) requests +Good. + - Issue of what to call an Orbi & FT +Primary term name: inductive detector (exact syn: image current detector) +In LTQ-FT or Orbi examples make the detectors: inductive detector - Needed example files - Example instance documents: - MIAPE-MS compliant example +Pierre-Alain and Darren will finish this by next week, by making ProteoWizard generate a MIAPE-MS compliant file - Working examples that include compressed spectra +Matt or Darren will do this - Get an example 4700 file. How to encode the sourceFile for that? +See if Sean Seymour will do this - MS^E example (I think Rune sent one out. Is it great?) +See if Rune would do it - We need to develop a good MALDI example file with spot id refs +Maybe part of 4700 example - We need to develop a good example of a file created from individual dtas including examples to multiple possible charge states +Frederik volunteered to do this within a week - We need to develop a good example of a file that contains summed scans and acquisitionList +Frederik volunteered do this within a week - Create an example of encoding a transient in an mzML file +Jim will do this - Get example than includes both PDA and MSn spectra in one file +Jim will finish this and send out - Example that Rune suggests about lockspray reference scans (implying multiple samples) +Rune?? - Create a metabolomics experiment example +Jim has done Other items: +Eric will populate the vocab list +Add Jim and Pierre-Alain to the vocab list +Add software to the vendor update request spreadsheets where possible +Address two open entries in term tracker, and then disable the term tracker +Jim needs addition of PDA terms to CV +Next call in exactly one week. Lennart will not be there but will arrange for someone at EBI to start the call. ________________________________ From: Eric Deutsch Sent: Tuesday, April 29, 2008 8:53 AM To: 'Mass spectrometry standard development' Cc: Eric Deutsch Subject: RE: PSI-MSS WG call tomorrow Hi everyone, here's the agenda for the call coming up at the top of the hour: Agenda: - Problem of two <sourceFileList> places - recursive referenceableParamGroup - userParam required value and type attributes - How will we organize CV editing? - Use db_xref to add data_type and hasUnits. Who will? Maybe Darren? - Lennart will release schema 0.99.10 - New mailing list psidev-ms-vocab for sending term (change) requests - Needed example files - Example instance documents: - Workin examples that include compressed spectra - Get an example 4700 file. How to encode the sourceFile for that? - MS^E example (I think Rune sent one out. Is it great?) - We need to develop a good MALDI example file with spot id refs - We need to develop a good example of a file created from individual dtas including examples to multiple possible charge states - We need to develop a good example of a file that contains summed scans and acquisitionList - Create an example of encoding a transient in an mzML file - Get example than includes both PDA and MSn spectra in one file ________________________________ From: Eric Deutsch Sent: Monday, April 28, 2008 3:10 PM To: 'Mass spectrometry standard development' Cc: Eric Deutsch Subject: PSI-MSS WG call tomorrow Hi everyone, as previously mentioned, the PSI Mass Spectrometry Standards Working Group call is tomorrow at 9am PDT: http://www.timeanddate.com/worldclock/fixedtime.html?day=29&month=4&year =2008&hour=17&min=0&sec=0&p1=136 + Germany: 08001012079 + Switzerland: 0800000860 + UK: 08081095644 + USA: 1-866-314-3683 + Generic international: +44 2083222500 (UK number) access code: 297427 The agenda will be to quickly review and discuss what remains to be done after the workshop in the next month, and discuss some of the flurry of emails since the workshop already. Please attend! Thanks, Eric |
