Re: [Psidev-ms-dev] PSI-MSSWG call minutes

[shivram <shi...@re...>]

  Can anyone help in analysing my Q-ToF data

please do let me know so that i can send my data


Thanks in advance

Shivram, PhD Student

On Wed, 16 Apr 2008 Eric Deutsch wrote :
>Hi everyone, here are the notes I took at today's telecon. Please let me
>know if I missed anything.
>
>
>
>Present: Lennart, Pierre-Alain, Darren, Eric, Matt, Josh
>
>
>
>- Status of xsd, examples, and pwiz
>
>Latest snapshot of schema 2008-03-27 is up to date.
>
>There are new example output files from pwiz on psidev site
>
>
>
>- Status of CV: encoding of datatype in CV; value type can be encoded.
>Everybody likes this.
>
>Matt: what about range? Eric: nonNegative and stuff, nothing more
>specific found? Matt: nope, nothing found.
>
>We can encode the datatypes in the CV. Someone needs to go ahead and do
>this in Toledo or before
>
>
>
>- mzML <-> MIAPE-MS mapping from Pierre-Alain
>
>Quantification is out of scope
>
>What about "Location of parameters file"? make it a cvParam URI
>
>Getting a sample MALDI doc showing spot IDs and samples is very
>important
>
>Next step: create a sample MIAPE-MS compliant document and expand CV
>accordingly
>
>Pierre-Alain will lead effort to get such a document finished in Toledo
>
>
>
>- Plans for Toledo next week
>
>95 registrants
>
>15 min intro to the for each WG
>
>
>
>- PDA examples from Jim
>
>Forthcoming soon in Toledo or perhaps before
>
>
>
>- Discussion of <chromatogramList> and Darren's suggested modification
>
>Eric neutral on this. This was discussed before in a similar form and
>discarded?
>
>Let's stick with what we had.
>
>Darren will implement an example this week
>
>
>
>CV update
>
>- Ping David Sparkman to redo his changes to the CV
>
>- Josh has a few minor items to add. Will email around for possible
>discussion before addition
>
>
>
>- Next call
>
>See if we can arrange during meeting, perhaps Thursday afternoon (9am
>PDT)
>
>Next usual telecom 9am PDT on April 29
>
>
>
>
>
>TODO at Toledo
>
>--------------
>
>  - Update CV with value types + define necessary new types.
>
>  - Hand-write a nice MALDI example file with spots referenced e.d.
>
>  - Create a fully MIAPE compliant example mzML file
>
>  - CV updating
>
>
>
>To dos from last time:
>
>
>
>- Darren will check if the xsd and his code are in synch and make notes
>for changes
>
>- Jim has examples in his head. Will send out soon.
>
>- Matt will come up with an example of an index for chromatograms
>
>- Matt will run a Quantum MRM file through msconvert and report results
>
>- Pierre-Alain will work on this and report results.
>
>- Can we encode the xsd datatypes in the obo file? Yes, let's try.
>
>- Lennart will explore this possibility, make an example, and report.
>
>- Use xsd datatypes. Maybe add nonNegativeFloat, e.g.
>
>
>
>
>
>General mentioned things yet to do:
>
>- Lennart will need to do some work on the validator when the schema is
>stable
>
>
>
>
>
>
>
>
>
>________________________________
>
> From: psi...@li...
>[mailto:psi...@li...] On Behalf Of Eric
>Deutsch
>Sent: Monday, April 14, 2008 10:11 PM
>To: 'Mass spectrometry standard development'
>Subject: [Psidev-ms-dev] PSI-MSSWG call in 11 hr
>
>
>
>Hi everyone, this is just a reminder of our scheduled call at 9am PDT
>(11 hr from now) Tuesday.
>
>
>
>+ Germany: 08001012079
>
>+ Switzerland: 0800000860
>
>+ UK: 08081095644
>
>+ USA: 1-866-314-3683
>
>+ Generic international: +44 2083222500 (UK number)
>
>access code: 297427
>
>
>
>Agenda items:
>
>- Status of xsd, cv, examples, and pwiz
>
>- mzML <-> MIAPE-MS mapping from Pierre-Alain
>
>- PDA examples from Jim
>
>- Plans for Toledo next week
>
>- Next call
>
>
>
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