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Re: [Psidev-ms-dev] <scan> nativeID
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From: Joshua T. <jt...@sy...> - 2008-03-03 18:41:49
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I agree (I'd actually brought this up too, on 2/25:) > I'd propose that if, in a specific file, these are used in the index, they should be enumerated more fully in the <spectrum> with cvParams, as previously suggested. -Josh Kessner, Darren E. wrote: > Nope, same idea, but we had only talked about putting 'nativeID' in the > <offset> entry in the <index>. > > I am proposing including 'nativeID' as an attribute to the corresponding > <spectrum> as well. > > > Darren > > > > -----Original Message----- > From: psi...@li... > [mailto:psi...@li...] On Behalf Of Joshua > Tasman > Sent: Monday, March 03, 2008 10:28 AM > To: Mass spectrometry standard development > Subject: Re: [Psidev-ms-dev] <scan> nativeID > > Hi Darren, > > I'm confused about this discussion (though maybe I've lost my place in > the threads?) Is this different than the ideas we were discussing last > week, regarding string formats for various vendor native scan addressing > schemes? > > Josh > > > Kessner, Darren E. wrote: >> Hi all, >> >> >> >> To pick up the discussion regarding <index> with nativeID, since we > have: >> <offset id="S19" nativeID="19">1234</offset> >> >> >> >> It would also be convenient, and consistent, to have nativeID in > <scan>: >> <spectrum index=0 id="S19" nativeID="19"> >> >> ... >> >> </spectrum> >> >> >> >> In general, whatever information is in the <index> entry should be >> easily available in the actual <spectrum> element. It makes > generating >> the <index> a lot simpler for writers, and allows easier validation of > >> the <spectrum> for readers. >> >> >> >> >> >> Darren >> >> >> >> >> >> >> >> Darren Kessner >> >> Scientific Programmer >> >> Dar...@cs... <mailto:Dar...@cs...> >> >> 310-423-9538 >> >> >> >> Spielberg Family Center for Applied Proteomics >> >> Cedars-Sinai Medical Center >> >> http://www.sfcap.cshs.org/ >> >> >> >> >> >> IMPORTANT WARNING: This message is intended for the use of the person > or >> entity to which it is addressed and may contain information that is >> privileged and confidential, the disclosure of which is governed by >> applicable law. If the reader of this message is not the intended >> recipient, or the employee or agent responsible for delivering it to > the >> intended recipient, you are hereby notified that any dissemination, >> distribution or copying of this information is STRICTLY PROHIBITED. >> >> If you have received this message in error, please notify us > immediately >> by calling (310) 423-6428 and destroy the related message. Thank You > for >> your cooperation. >> >> >> > ------------------------------------------------------------------------ >> > ------------------------------------------------------------------------ > - >> This SF.net email is sponsored by: Microsoft >> Defy all challenges. Microsoft(R) Visual Studio 2008. >> http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ >> >> >> > ------------------------------------------------------------------------ >> _______________________________________________ >> Psidev-ms-dev mailing list >> Psi...@li... >> https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev > > ------------------------------------------------------------------------ > - > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2008. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > _______________________________________________ > Psidev-ms-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev > IMPORTANT WARNING: This message is intended for the use of the person or entity to which it is addressed and may contain information that is privileged and confidential, the disclosure of which is governed by > applicable law. If the reader of this message is not the intended recipient, or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this information is STRICTLY PROHIBITED. > > If you have received this message in error, please notify us immediately > by calling (310) 423-6428 and destroy the related message. Thank You for your cooperation. > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2008. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > _______________________________________________ > Psidev-ms-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-ms-dev |
