Re: [Psidev-ms-dev] <scan> nativeID

[Joshua T. <jt...@sy...>]

Hi Darren,

I'm confused about this discussion (though maybe I've lost my place in the threads?)  Is this different than the ideas we were discussing last week, regarding string formats for various vendor native scan addressing schemes?

Josh


Kessner, Darren E. wrote:
> Hi all,
> 
>  
> 
> To pick up the discussion regarding <index> with nativeID, since we have:
> 
>   <offset id="S19" nativeID="19">1234</offset>
> 
>  
> 
> It would also be convenient, and consistent, to have nativeID in <scan>:
> 
>   <spectrum index=0 id="S19" nativeID="19">
> 
>   ...
> 
>   </spectrum>
> 
>  
> 
> In general, whatever information is in the <index> entry should be 
> easily available in the actual <spectrum> element.  It makes generating 
> the <index> a lot simpler for writers, and allows easier validation of 
> the <spectrum> for readers.
> 
>  
> 
>  
> 
> Darren
> 
>  
> 
>  
> 
>  
> 
> Darren Kessner
> 
> Scientific Programmer
> 
> Dar...@cs... <mailto:Dar...@cs...>
> 
> 310-423-9538
> 
>  
> 
> Spielberg Family Center for Applied Proteomics
> 
> Cedars-Sinai Medical Center
> 
> http://www.sfcap.cshs.org/
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