Re: [Psidev-ms-dev] a few more CV name issues

[Eric D. <ede...@sy...>]

> -----Original Message-----
> From: psi...@li...
[mailto:psidev-ms-dev-
> bo...@li...] On Behalf Of Lennart Martens
> Sent: Thursday, February 14, 2008 3:24 AM
> To: Mass spectrometry standard development
> Subject: Re: [Psidev-ms-dev] a few more CV name issues
> 
> Hi Darren,
> 
> 
> > 1) exact_synonym same as name (except for capitalization):
> >
> > [Term]
> > id: MS:1000114
> > name: microchannel plate detector
> > def: ...
> > exact_synonym: "Microchannel Plate Detector" []
> > exact_synonym: "multichannel plate" []
> > is_a: MS:1000026 ! detector type
> 
> I believe this one is intentional so I'm unsure about whether to
record
> it as 'to correct' (thoughts anyone?), but the rest is certainly
flagged
> now!

I don't see why this would make sense. I think it should be deleted. I
just did. Anyone yell if it should be restored.

This brings up another issue though. At one point last year, we went
through an effort to change all terms to lower case (except proper names
like "Waters" and acronyms).  But it looks like this change was not
applied to exact_synonyms. It should be.

Regarding Darren's:
> id: MS:1000580
> name: MSn spectrum
> def: ...
> exact_synonym: "Multiple-Stage Mass Spectrometry" []

synonym collision, I changed to:

exact_synonym: "multiple-stage mass spectrometry spectrum" []

Please let me know if you object.

Yes, any term with a '?' should be revisited.

Thanks,
Eric



> 
> Thanks!
> 
> Cheers,
> 
> lnnrt.
> >
> >
> >
> >
> >
> > 2) near name collision with exact_synonym:
> >
> >
> >
> > [Term]
> >
> > id: MS:1000270
> >
> > name: multiple stage mass spectrometry
> >
> > def: ...
> >
> > exact_synonym: "MSn" []
> >
> > is_a: MS:1000445 ! sequential m/z separation method ?
> >
> >
> >
> > [Term]
> >
> > id: MS:1000580
> >
> > name: MSn spectrum
> >
> > def: ...
> >
> > exact_synonym: "Multiple-Stage Mass Spectrometry" []
> >
> > is_a: MS:1000524 ! data file content
> >
> > is_a: MS:1000559 ! spectrum type
> >
> >
> >
> >
> >
> > 3) some term names have ? at end -- I assume this is to flag for
> > reconsideration
> 
>
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