Re: [Psidev-pi-dev] DC Meeting

[David C. <dc...@ma...>]

Hello,
The spreadsheet is, I believe in a state that can be used to proceed 
with the design analysisXML.

I've just added a miape column which hopefully someone can check.

On the spreadsheet there's a rules tab with the very simple rules that 
we agreed in SF for making decisions about what should be and what 
shouldn't be in the analysisXML schema. There are also 'notes' for many 
of the cells. Some detail is almost certainly missing, particularly in 
the quantification section. We've had feedback from representatives for 
all the major database engines except Waters, which is entirely my fault 
because I've only just asked...

One question, still unresolved is if/how we should support denovo 
sequencing. This isn't 'supported' by our miape docs and looks to be 
particularly hard and possibly not that useful. At the moment, I find it 
very hard to see how we can support it without making almost everything 
optional.

http://psidev.sourceforge.net/docstore/view.php?action=xls_show&id=110

Unfortunately sf is very slow again at the moment...

Have fun in Washington
  - DC

Angel Pizarro wrote:
> Hello Folks, 
> I have been incredibly busy the last few weeks and have not had time until now 
> to work on the PSI-PI issues that need addressing. 
> 
> First, the UML model needs work. Currently it is simply a straw-man model to 
> show the basics of analysisXML encoded as a UML model. I think it should stay 
> this way until the meeting and we can work on the actual model at the meeting 
> using the search engine spreadsheet as a basis for modeling. 
> 
> Which brings me to my next point, the search engine spreadsheet. David Creasy, 
> our other fearless leader, cannot attend the meeting this go-round, but he 
> will be sending the status of the document to me shortly as well as a quick 
> summary of the contents (hint hint)
> 
> Lastly, in order to provide an example of how this all fits together, we 
> shouldlook to the Gel group, as they are much farther in the process than we 
> are. I'll ask Andy to prepare a small presentation, as I think the PSI-MS 
> group will also be very interested. 
> 
> angel
> 

-- 
David Creasy
Matrix Science
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London W1U 7GB, UK
Tel: +44 (0)20 7486 1050
Fax: +44 (0)20 7224 1344

dc...@ma...
http://www.matrixscience.com

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