File | Date | Author | Commit |
---|---|---|---|
lib | 2017-08-02 |
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[6d904f] utility |
script | 2017-08-05 |
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[da4d16] fix 0805 |
LICENSE | 2017-08-02 |
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[731e23] Initial commit |
README.md | 2017-08-05 |
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[0faf47] fix 0805 |
help.txt | 2017-08-04 |
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[28c32f] Update help.txt |
#proteomics utilities
=======Copyright
Copyright (C) 2017, WANG Limited.
contact:wjlong0318@163.com
This script is free software. You can redistribute and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; either version 2
of the License or, (at your option), any later version.
These modules are distributed in the hope that they will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
======= IDconvert.pl
script/IDconvert.pl 20170804
function:fasta file blast fasta file for id matching
out file, seperated with comma, can be opened by excel
out file format:
query,subject,Identities,query match length,mismatches,
gap openings,query start,query end,sbject start,sbject end,E Value,Score
blastp -evalue 0.000001
Usage: perl IDconvert.pl [filepath]
Usage: if you do not use parameter,
you could put two fasta files and IDconvert.pl file into same folder,
then double-click
Example: perl IDconvert.pl input
perl IDconvert.pl
======= AllMerge.pl
script/AllMerge.pl 20170804
function:merging mutilfiles(CSV) bases on left colume
version:1.01
Usage: perl AllMerge.pl [filepath]
Usage: if you do not use parameter,
you could put all csv files and AllMerge.pl file into same folder,
then Double-click
Example: perl Almerge.pl input
perl Almerge.pl
======= csv2fasta.pl
script/csv2fasta.pl 20170804
function:convert csv to fasta
version:1.01
Usage: perl csv2fasta.pl [filepath]
Usage: if you do not use parameter,
you could put all csv files and csv2fasta.pl file into same folder,
double-click
Example: perl csv2fasta.pl input
perl csv2fasta.pl
======= fasta2csv.pl
script/fasta2csv.pl 20170804
function:convert fasta to csv
version:1.01
Usage: perl fasta2csv.pl [filepath]
Usage: if you do not use parameter,
you could put all csv files and fasta2csv.pl file into same folder,
double-click
Example: perl fasta2csv.pl input
perl fasta2csv.pl
======= md5.pl
script/md5.pl 20170804
function:caculate MD5 value of all files in current folder
version:1.01
Usage:put all files and MD5.pl file into same folder,double-click