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From: Chambers, M. <mat...@gm...> - 2019-03-01 15:37:15
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Fixed in the latest version. Thanks for the report! -Matt On 2/27/2019 9:38 PM, Luis M. Sánchez wrote: > Dear Sirs, > > I am trying to convert wiff/wiff.scan file pairs generated by an Applied Biosystems (now AB-SCIEX) QTrap 3200. > > If I use `msconvert.exe ttt.wiff` I get some processing messages: > > format: mzML > m/z: Compression-None, 64-bit > intensity: Compression-None, 32-bit > rt: Compression-None, 64-bit > ByteOrder_LittleEndian > indexed="true" > outputPath: . > extension: .mzML > contactFilename: > runIndexSet: > spectrum list filters: > chromatogram list filters: > filenames: ttt.wiff > processing file: ttt.wiff > > But then msconvert.exe exits with two error messages: > [Reader_ABI::read] Error opening run 1 in "ttt.wiff": > WiffFileImpl::getInstrumentModel()] unknown instrument type: QTrap > > If I use `msconvert.exe --ignoreUnknownInstrumentError ttt.wiff` I get the same messages, including the error ones. > > I have tried ProteoWizard 3.0 19057 32-bit in Windows 7 32-bit (updated) and the 32-bit and 62-bit versions of ProteoWizard in Windows 10 > (updated). Always with the same results. > > In my computer, msconvert.exe works fine with raw input files from other instruments. > > The problematic wiff/wiff.scan file pairs contain shotgun proteomics data, and can be converted by an AB-SCIEX windows utility: > AB_SCIEX_MS_Data_Converter_1.3beta. However, AB-SCIEX indicates that its converter can't convert Selected Reaction Monitoring data. > > I am doing anything wrong? > > Thanks for a great software package and Best Regards > |