Re: [proteowizard-support] General MSConvert question

[Gavin B. <gav...@st...>]

Hi Matt,

Thanks for the info that's great and very helpful.

Cheers,

Gavin.

-----Original Message-----
From: Matthew Chambers [mailto:mat...@gm...] 
Sent: 04 April 2011 22:09
To: pro...@li...
Subject: Re: [proteowizard-support] General MSConvert question

Hi Gavin,

Agilent is the best supported instrument behind Thermo. Specifically, their API provides 
post-acquisition peak picking for their TOF and QTOF instruments (not QQQ). There's supposed to be a 
new update to their API imminently available ('next week' several weeks ago) which will should boost 
performance of access to their profile data. There are new APIs coming for Waters and ABI too, but 
in contrast to Thermo/Agilent they will only provide access to the raw data (no change in that 
respect for Waters, but a step back for ABI).

Hope this helps,
-Matt


On 4/1/2011 7:04 AM, Gavin Blackburn wrote:
> Hi,
>
> This is just a general question as we are considering new instrumentation. Are there any known
> issues with converting the files produced by an Agilent QTOF to mzXML with msconvert? We just want
> to make sure our data processing isn't going to be compromised by choosing a particular instrument.
>
> Many thanks,
>
> Gavin.

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