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#2 gp_information file for SGD

1.0
closed
nobody
None
2015-04-14
2015-03-24
No

Tony, all,

The gp_information.559292 file is missing the SGDID in column 9 for several rows.
e.g.P38209, P38192.

Can you please tell us where the problem is?

Thanks,

Rama

Discussion

  • Tony Sawford

    Tony Sawford - 2015-03-26

    Please note that this tracker is intended for questions / suggestions / bug reports relating specifically to the use of Protein2GO; any other queries should be directed to goa@ebi.ac.uk, as usual.

    The db_xrefs column in this file is populated from the table that supports the MOD identifier lookup functionality in Protein2GO, and which was initially populated using a gp_information file that I put together using information in the then-current SGD gene_association and gp2protein files; it has not been updated since. If you can supply me with details of the missing mappings I'll update the table.

     
  • Rama balakrishnan

    Tony,

    Okay. Thanks.

    R

     
  • Tony Sawford

    Tony Sawford - 2015-04-14
    • status: open --> closed
     
  • Tony Sawford

    Tony Sawford - 2015-04-14

    Dictionary table now updated, using mapping information provided by Rama on 01 April 2015.

     

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