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#133 J3QQ16

None
closed
Darren Natale
None
5
2019-03-25
2019-03-22
Harold J. Drabkin
No

GOA_BHF-UC has used J3QQ16 for annotation. Currently this entry is dynamically generated at PRO. It is a trembl entry. MGI needs this entry to be in the regular PRO so that we can convert it to a PRO id during our load (we convert GOA UniProt ids to PRO ids). The reference for the paper used for annotation is PMID:28071719
Ruther Lovering is the contact for BHF-UC annotations Ruth Lovering r.lovering@ucl.ac.uk

Discussion

  • Harold J. Drabkin

    Harold J. Drabkin - 2019-03-22

    The same group has used D3YX90 for annotation using PMID:22159717. Needs to be moved into PRO

     

  • Darren Natale

    Darren Natale - 2019-03-25
    • status: open --> closed
    • assigned_to: Darren Natale
    • Group: -->
     

  • Darren Natale

    Darren Natale - 2019-03-25

    I have created the following two terms. The first one is considered organism-sequence because it is one of many isoforms (according to MGI), and not even the longest one, and it is quite unlikely that this entry will become the canonical. The second term is also one of many isoforms, but this one is the most likely to be the canonical for mouse based on alignment with the human orthology. I have therefore defined it as an organism-gene term.

    [Term]
    id: PR:J3QQ16
    name: collagen, type VI, alpha 3 isoform J3QQ16 (mouse)
    def: "A collagen alpha-3(VI) chain that is encoded by the mouse Col6a3 gene and is a translation product of some mRNA giving rise to a protein with the amino acid sequence represented by UniProtKB:J3QQ16." [PRO:DAN, UniProtKB:J3QQ16, PMID:28071719]
    comment: Category=organism-sequence.
    xref: UniProtKB:J3QQ16
    is_a: PR:000003341 ! collagen alpha-3(VI) chain
    relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus
    relationship: has_gene_template MGI:88461 ! Col6a3 (mouse)

    [Term]
    id: PR:D3YX90
    name: a disintegrin and metalloproteinase with thrombospondin motifs 17 (mouse)
    def: "An a disintegrin and metalloproteinase with thrombospondin motifs 17 that is encoded in the genome of mouse." [PRO:DAN, PMID:22159717]
    comment: Category=organism-gene.
    synonym: "mADAMTS17" EXACT PRO-short-label [PRO:DAN]
    xref: UniProtKB:D3YX90
    intersection_of: PR:000030471 ! a disintegrin and metalloproteinase with thrombospondin motifs 17
    intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens
    relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus
    relationship: has_canonical_sequence UniProtKB:D3YX90 ! D3YX90-1

     

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