#125 S. pombe ras1, GTP-bound form

[Midori Harris]

For PMID:29453312, could we have terms for GTP-bound S. pombe Ras1? I'm suggesting stanzas based on the Cdc42 terms you added for us in https://sourceforge.net/p/pro-obo/term-requests/116/:

[Term]
id: PR:new1
name: ras-like protein 1 (Schizosaccharomyces pombe)
def: "A ras-like protein 1 that is encoded in the genome of Schizosaccharomyces pombe." [PRO:DAN]
comment: Category=organism-gene. Requested by=PomBase.
synonym: "Spom-ras1" EXACT PRO-short-label [PRO:DNx]
synonym: "SPAC17H9.09c" RELATED []
intersection_of: PR:000000001 ! protein
intersection_of: only_in_taxon NCBITaxon:4896 ! Schizosaccharomyces pombe
relationship: has_gene_template PomBase:SPAC17H9.09c ! ras1 (Schizosaccharomyces pombe)

[Term]
id: PR:new2
name: ras-like protein 1, GTP-bound form (Schizosaccharomyces pombe)
def: "A ras-like protein 1 (Schizosaccharomyces pombe) that is non-covalently bound to GTP." [PRO:DAN, PomBase:MH, PMID:29453312]
comment: Category=organism-complex. Requested by=PomBase.
synonym: "Spom-ras1/GTP+" EXACT PRO-short-label [PRO:DAN]
intersection_of: PR:new1 ! ras-like protein 1 (Schizosaccharomyces pombe)
intersection_of: non-covalently_bound_to CHEBI:15996 ! GTP
relationship: only_in_taxon NCBITaxon:4896 ! Schizosaccharomyces pombe

As with the cdc42 terms, we neither require nor oppose terms specific for NCBITaxon:284812 (corresponding to UniProtKB:P08647). But the existing 284812-specific term PR:P08647 could have the link is_a PR:new1.

Thanks,
Midori

[Darren Natale]

Ohhh I like the easy ones :)
Here are your terms, which will appear on the web immediately, and in the download with the next release (within about a month).

[Term]
id: PR:000036978
name: ras-like protein 1 (Schizosaccharomyces pombe)
def: "A protein that is a translation product of the ras1 gene in Schizosaccharomyces pombe." [PRO:DAN]
comment: Category=organism-gene. Requested by=PomBase.
synonym: "Spom-ras1" EXACT PRO-short-label [PRO:DNx]
synonym: "SPAC17H9.09c" RELATED []
intersection_of: PR:000000001 ! protein
intersection_of: only_in_taxon NCBITaxon:4896 ! Schizosaccharomyces pombe
intersection_of: has_gene_template PomBase:SPAC17H9.09c ! ras1 (Schizosaccharomyces pombe)

[Term]
id: PR:000036979
name: ras-like protein 1, GTP-bound form (Schizosaccharomyces pombe)
def: "A ras-like protein 1 (Schizosaccharomyces pombe) that is non-covalently bound to GTP." [PRO:DAN, PomBase:MH, PMID:29453312]
comment: Category=organism-complex. Requested by=PomBase.
synonym: "Spom-ras1/GTP+" EXACT PRO-short-label [PRO:DAN]
intersection_of: PR:000036978 ! ras-like protein 1 (Schizosaccharomyces pombe)
intersection_of: non-covalently_bound_to CHEBI:15996 ! GTP
relationship: only_in_taxon NCBITaxon:4896 ! Schizosaccharomyces pombe

[Midori Harris]

I know the feeling. Thanks again for another amazingly fast turnaround!