request to add proteins in the protein ontology
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darren_natale
Hi,
I am using Protein Ontology to discover protein models in my PhD project. Would you please include the following proteins in the Protein Ontology?
PR_P11170, PR_P31636
Thanks,
Dewan Sarwar
PhD Student
Auckland Bioengineeirng Institute
University of Auckland
**Term Requests** DEPRECATED: use purl.obolibrary.org/obo/pr/tracker: #118
Thank you for using PRO! I have added the terms you requested. The OBO format stanzas are given below (though some line wrapping will occur). Each of the terms have been curated and will appear on the PRO entry page (which will differ from the automatically-generated version). However, they will not yet be visible in the PRO download other than the limited-scope work-in-progress version, available now at http://pir.georgetown.edu/projects/pro/pro_wv.obo).
Best regards,
Darren Natale
[Term]
id: PR:P11170
name: sodium/glucose cotransporter 1 (rabbit)
def: "A sodium/glucose cotransporter 1 that is encoded in the genome of rabbit." [PRO:DAN]
comment: Category=organism-gene.
synonym: "rabbit-SLC5A1" EXACT PRO-short-label [PRO:auto]
synonym: "Na(+)/glucose cotransporter 1 (rabbit)" EXACT [UniProtKB:P11170]
synonym: "high affinity sodium-glucose cotransporter (rabbit)" EXACT [UniProtKB:P11170]
synonym: "solute carrier family 5 member 1 (rabbit)" EXACT [UniProtKB:P11170]
synonym: "SGLT1" RELATED [UniProtKB:P11170]
xref: UniProtKB:P11170
intersection_of: PR:000015165 ! sodium/glucose cotransporter 1
intersection_of: only_in_taxon NCBITaxon:9986 ! Oryctolagus cuniculus
relationship: has_gene_template NCBIGene:100009262 ! SLC5A1 (rabbit)
[Term]
id: PR:P31636
name: low affinity sodium-glucose cotransporter (pig)
def: "A low affinity sodium-glucose cotransporter that is encoded in the genome of pig." [PRO:DAN, OMA:P31636]
comment: Category=organism-gene.
synonym: "pig-SLC5A4" EXACT PRO-short-label [PRO:auto]
synonym: "sodium/glucose cotransporter 3 (pig)" EXACT [UniProtKB:P31636]
synonym: "Na(+)/glucose cotransporter 3 (pig)" EXACT [UniProtKB:P31636]
synonym: "solute carrier family 5 member 4 (pig)" EXACT [UniProtKB:P31636]
synonym: "SAAT1" RELATED [UniProtKB:P31636]
synonym: "SGLT3" RELATED [UniProtKB:P31636]
xref: UniProtKB:P31636
intersection_of: PR:000030286 ! low affinity sodium-glucose cotransporter
intersection_of: only_in_taxon NCBITaxon:9823 ! Sus scrofa
relationship: has_gene_template NCBIGene:397376 ! SLC5A4 (pig)
Hi Darren,
Thanks for your reply and adding the protein models.
Thanks,
Dewan
On 20 September 2017 at 08:49, Darren Natale darren_natale@users.sf.net
wrote:
Thank you.
On 22 March 2018 at 11:59, Darren Natale darren_natale@users.sourceforge.net wrote:
Related
**Term Requests** DEPRECATED: use purl.obolibrary.org/obo/pr/tracker:
#118