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#118 request to add proteins in the protein ontology

None
closed
Darren Natale
None
5
2018-03-21
2017-09-18
Dewan Mahabub Sarwar
No

Hi,

I am using Protein Ontology to discover protein models in my PhD project. Would you please include the following proteins in the Protein Ontology?

PR_P11170, PR_P31636

Thanks,

Dewan Sarwar
PhD Student
Auckland Bioengineeirng Institute
University of Auckland

Related

**Term Requests** DEPRECATED: use purl.obolibrary.org/obo/pr/tracker: #118

Discussion

  • Darren Natale

    Darren Natale - 2017-09-19

    Thank you for using PRO! I have added the terms you requested. The OBO format stanzas are given below (though some line wrapping will occur). Each of the terms have been curated and will appear on the PRO entry page (which will differ from the automatically-generated version). However, they will not yet be visible in the PRO download other than the limited-scope work-in-progress version, available now at http://pir.georgetown.edu/projects/pro/pro_wv.obo).

    Best regards,
    Darren Natale

    [Term]
    id: PR:P11170
    name: sodium/glucose cotransporter 1 (rabbit)
    def: "A sodium/glucose cotransporter 1 that is encoded in the genome of rabbit." [PRO:DAN]
    comment: Category=organism-gene.
    synonym: "rabbit-SLC5A1" EXACT PRO-short-label [PRO:auto]
    synonym: "Na(+)/glucose cotransporter 1 (rabbit)" EXACT [UniProtKB:P11170]
    synonym: "high affinity sodium-glucose cotransporter (rabbit)" EXACT [UniProtKB:P11170]
    synonym: "solute carrier family 5 member 1 (rabbit)" EXACT [UniProtKB:P11170]
    synonym: "SGLT1" RELATED [UniProtKB:P11170]
    xref: UniProtKB:P11170
    intersection_of: PR:000015165 ! sodium/glucose cotransporter 1
    intersection_of: only_in_taxon NCBITaxon:9986 ! Oryctolagus cuniculus
    relationship: has_gene_template NCBIGene:100009262 ! SLC5A1 (rabbit)

    [Term]
    id: PR:P31636
    name: low affinity sodium-glucose cotransporter (pig)
    def: "A low affinity sodium-glucose cotransporter that is encoded in the genome of pig." [PRO:DAN, OMA:P31636]
    comment: Category=organism-gene.
    synonym: "pig-SLC5A4" EXACT PRO-short-label [PRO:auto]
    synonym: "sodium/glucose cotransporter 3 (pig)" EXACT [UniProtKB:P31636]
    synonym: "Na(+)/glucose cotransporter 3 (pig)" EXACT [UniProtKB:P31636]
    synonym: "solute carrier family 5 member 4 (pig)" EXACT [UniProtKB:P31636]
    synonym: "SAAT1" RELATED [UniProtKB:P31636]
    synonym: "SGLT3" RELATED [UniProtKB:P31636]
    xref: UniProtKB:P31636
    intersection_of: PR:000030286 ! low affinity sodium-glucose cotransporter
    intersection_of: only_in_taxon NCBITaxon:9823 ! Sus scrofa
    relationship: has_gene_template NCBIGene:397376 ! SLC5A4 (pig)

     

    • Dewan Mahabub Sarwar

      Dewan Mahabub Sarwar - 2017-09-19

      Hi Darren,

      Thanks for your reply and adding the protein models.

      Thanks,
      Dewan

      On 20 September 2017 at 08:49, Darren Natale darren_natale@users.sf.net
      wrote:

      Thank you for using PRO! I have added the terms you requested. The OBO
      format stanzas are given below (though some line wrapping will occur). Each
      of the terms have been curated and will appear on the PRO entry page (which
      will differ from the automatically-generated version). However, they will
      not yet be visible in the PRO download other than the limited-scope
      work-in-progress version, available now at http://pir.georgetown.edu/
      projects/pro/pro_wv.obo).

      Best regards,
      Darren Natale

      [Term]
      id: PR:P11170
      name: sodium/glucose cotransporter 1 (rabbit)
      def: "A sodium/glucose cotransporter 1 that is encoded in the genome of
      rabbit." [PRO:DAN]
      comment: Category=organism-gene.
      synonym: "rabbit-SLC5A1" EXACT PRO-short-label [PRO:auto]
      synonym: "Na(+)/glucose cotransporter 1 (rabbit)" EXACT [UniProtKB:P11170]
      synonym: "high affinity sodium-glucose cotransporter (rabbit)" EXACT
      [UniProtKB:P11170]
      synonym: "solute carrier family 5 member 1 (rabbit)" EXACT
      [UniProtKB:P11170]
      synonym: "SGLT1" RELATED [UniProtKB:P11170]
      xref: UniProtKB:P11170
      intersection_of: PR:000015165 ! sodium/glucose cotransporter 1
      intersection_of: only_in_taxon NCBITaxon:9986 ! Oryctolagus cuniculus
      relationship: has_gene_template NCBIGene:100009262 ! SLC5A1 (rabbit)

      [Term]
      id: PR:P31636
      name: low affinity sodium-glucose cotransporter (pig)
      def: "A low affinity sodium-glucose cotransporter that is encoded in the
      genome of pig." [PRO:DAN, OMA:P31636]
      comment: Category=organism-gene.
      synonym: "pig-SLC5A4" EXACT PRO-short-label [PRO:auto]
      synonym: "sodium/glucose cotransporter 3 (pig)" EXACT [UniProtKB:P31636]
      synonym: "Na(+)/glucose cotransporter 3 (pig)" EXACT [UniProtKB:P31636]
      synonym: "solute carrier family 5 member 4 (pig)" EXACT [UniProtKB:P31636]
      synonym: "SAAT1" RELATED [UniProtKB:P31636]
      synonym: "SGLT3" RELATED [UniProtKB:P31636]
      xref: UniProtKB:P31636
      intersection_of: PR:000030286 ! low affinity sodium-glucose cotransporter
      intersection_of: only_in_taxon NCBITaxon:9823 ! Sus scrofa
      relationship: has_gene_template NCBIGene:397376 ! SLC5A4 (pig)

      Status: open
      Group:
      Created: Mon Sep 18, 2017 10:00 PM UTC by Dewan Mahabub Sarwar
      Last Updated: Mon Sep 18, 2017 10:00 PM UTC
      Owner: nobody

      Hi,

      I am using Protein Ontology to discover protein models in my PhD project.
      Would you please include the following proteins in the Protein Ontology?

      PR_P11170, PR_P31636

      Thanks,

      Dewan Sarwar
      PhD Student
      Auckland Bioengineeirng Institute
      University of Auckland

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