https://sourceforge.net/p/ppmerge/wiki/example%2520input/Recent changes to example inputenWed, 03 Dec 2014 16:38:40 -0000https://sourceforge.net/p/ppmerge/wiki/example%2520input/<div class="markdown_content"><pre>--- v1 +++ v2 @@ -1,6 +1,35 @@ +Example input +============== -Dataset 1: *Mus musculus* +1-2 are MaxQuant files that add modification site probabilities and are optional +3 is qpmerge metadata flat file format (it needs to be converted to xml with the TemplateMetaData importer) +4 is progenesis quantification -Dataset 2: *Arabidopsis thaliana* +Dataset 1: *Mus musculus* (mouse, mammalian model organism) +---- +Find the following files in the Download section under examples/mouse -Dataset 3: *Ostreococcus tauri* +1. MaxQuant_Output_Phospho (ST)Sites.txt +2. MaxQuant_Output_Phospho (Y)Sites.txt +3. METADATA.txt +4. Progenesis_Output_pr140319_ms090319ph_mo_peptide.csv + +Dataset 2: *Arabidopsis thaliana* (plant model organism) +---- + +Find the following files in the Download section under examples/arabidopsis + +1. MaxQuant_Output_Phospho (ST)Sites.txt +2. MaxQuant_Output_Phospho (Y)Sites.txt +3. METADATA.txt +4. Progenesis_Output_pr140404_at_ms131108_OGethyl-SDSethyl_all.csv + +Dataset 3: *Ostreococcus tauri* (algae, smallest free living eukaryote) +---- + +Find the following files in the Download section under examples/ostreococcus + +1. MaxQuant_Output_Phospho (ST)Sites.txt +2. MaxQuant_Output_Phospho (Y)Sites.txt +3. METADATA.txt +4. Progenesis_Output_08_PR120907_MS120906_ot_CK1phospho_peptide_cca1-IC261.csv </pre> </div>Matthew HindleWed, 03 Dec 2014 16:38:40 -0000https://sourceforge.net425f22dce7f4993e186440f04eb739d975626ba1https://sourceforge.net/p/ppmerge/wiki/example%2520input/<div class="markdown_content"><p>Dataset 1: <em>Mus musculus</em></p> <p>Dataset 2: <em>Arabidopsis thaliana</em></p> <p>Dataset 3: <em>Ostreococcus tauri</em></p></div>Matthew HindleWed, 03 Dec 2014 16:23:39 -0000https://sourceforge.net8ad7a646506a9691eaa65849c171a0a966fd452f