Overview of code design

A guide for Java programmers wanting to use qpMerge as a library

Key bookmarks in the Java package structure

Core functions

• uk.ac.ed.millar.proteomics
  • The qpmerge datamodel
• uk.ac.ed.millar.merger
  • The individual merging tools
• uk.ac.ed.millar.parser
  • Data import from XLSX, TSV tabular, and MzQuantML
• uk.ac.ed.millar.exporter
  • Data export into MzQuantML and TSV tabular
• uk.ac.ed.millar.exporter.merger.FactoryMethods
  • Data import and export in the native qpMerge XML format

Extended functions

• uk.ac.ed.millar.statistics
  • Statistics as factory methods over the qpmerge datamodel
• uk.ac.ed.millar.ontologies
  • Unimod parser and tools
• uk.ac.ed.millar.services
  • Webservice clients and tools for working with EBI, Uniprot and InterProScan