qPMerge released /qPMerge_beta.3_source_javadoc.jar

Matthew Hindle committed [r60]

add source and javadoc generation

qPMerge released /qPMerge_beta.3_source.jar

qPMerge released /qPMerge_beta.3_source.jar.jar

qPMerge released /qpMerge_beta.3_testing.exe

qPMerge released /qPMerge_beta.3_testing.jar

Matthew Hindle committed [r59]

updated Main entry point

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The qpMerge cookbook

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The qpMerge cookbook

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The qpMerge cookbook

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The qpMerge cookbook

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The qpMerge cookbook

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The qpMerge cookbook

Matthew Hindle committed [r58]

add TemplateMetaData as tool

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Command line commands and parameters

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Command line commands and parameters

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Command line commands and parameters

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Command line commands and parameters

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Command line commands and parameters

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Command line commands and parameters

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Command line commands and parameters

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Command line commands and parameters

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example input

qPMerge released /example/ostreococcus/METADATA.txt

qPMerge released /example/ostreococcus/Progenesis_Output_08_PR120907_MS120906_ot_CK1phospho_peptide_cca1-IC261.csv

qPMerge released /example/ostreococcus/MaxQuant_Output_Phospho (ST)Sites.txt

qPMerge released /example/ostreococcus/MaxQuant_Output_Phospho (Y)Sites.txt

qPMerge released /example/arabidopsis/Progenesis_Output_pr140404_at_ms131108_OGethyl-SDSethyl_all.csv

qPMerge released /example/arabidopsis/MaxQuant_Output_Phospho (ST)Sites.txt

qPMerge released /example/arabidopsis/METADATA.txt

qPMerge released /example/arabidopsis/MaxQuant_Output_Phospho (Y)Sites.txt

qPMerge released /example/mouse/Progenesis_Output_pr140319_ms090319ph_mo_peptide.csv

qPMerge released /example/mouse/MaxQuant_Output_Phospho (Y)Sites.txt

qPMerge released /example/mouse/MaxQuant_Output_Phospho (ST)Sites.txt

qPMerge released /example/mouse/METADATA.txt

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example input

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example metadata

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example METADATA

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example METADATA

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example METADATA

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Description of data model

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Overview of code design

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Overview of code design

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GalaxyInstall

Matthew Hindle committed [r57]

update for bugfixes

Matthew Hindle committed [r56]

update for bugfixes

Matthew Hindle committed [r55]

update for bugfixes

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update for bugfixes

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cleanup

Matthew Hindle committed [r48]

mzquantml galaxy wrapper

Matthew Hindle committed [r47]

Various mzq parser and svg viz for peptide data

Matthew Hindle committed [r46]

adaption of datamodel to fully support mzq import

Matthew Hindle committed [r45]

documentation

Matthew Hindle committed [r44]

Add features to DataSet holder

Matthew Hindle committed [r43]

Add feature --> peptide --> protein data model

qPMerge released /qPMerge_beta.2_testing.tar.gz

Matthew Hindle committed [r42]

fixed null pointer on non-phospho statistics

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qPMerge released /qPMerge_beta.1_source.jar

qPMerge released /qPMerge_beta.1_testing.tar.gz

qPMerge released /qPMerge_alpha.1_testing.tar.gz

Matthew Hindle committed [r41]

adding OrthoMCL tools