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Re: [Postgres-xc-bugs] pgxc (1.1) build problems on ubuntu
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From: Alex T. <at...@gr...> - 2013-12-30 17:39:16
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Here's my configure (final form). I wasn't specifying any of the
directories in the first failed and first successful builds:
export CPPFLAGS="-DLINUX_OOM_SCORE_ADJ=0"
./configure --with-perl --with-openssl --with-pam --with-ldap \
--with-ossp-uuid --with-libxml --with-libxslt \
--prefix=/usr --datarootdir=/usr/share/postgres-xc \
--sysconfdir=/etc/postgres-xc --localstatedir=/var/lib/postgres-xc \
--datadir=/data
For some reason configure wasn't passing "-pthread" but instead
"-lpthread" to gcc on the first pass. I've also dropped the
--disable-thread-safety because, once everything started finding all the
libraries correctly, that wasn't necessary. So it *is* building with
pthreads, but mostly because that's what configure seems to have picked
up rather than a preference for them over native linux threads. I've
been using them with postgres on freebsd for as long as I can remember
so it didn't strike me as an issue.
alex
On 12/30/13, 5:37 AM, Koichi Suzuki wrote:
> Could you let me know what options you specified with configure? It
> seems that you're trying to use pthread. I'd like to test if it is
> what you intend.
>
> Regards;
> ---
> Koichi Suzuki
>
>
> 2013/12/27 Alex Toth <at...@gr...>:
>> If this is more appropriate for the postgres-xc-developers@ list, let me
>> know and I'll send it there
>>
>> ============================================================================
>> POSTGRES-XC BUG REPORT TEMPLATE
>> ============================================================================
>>
>> Your name : alex toth
>> Your email address : alex (at) gravity.com
>>
>>
>> System Configuration:
>> ---------------------
>> Architecture : AMD 64
>>
>> Operating System : Ubuntu 12.04.3 LTS
>>
>> Postgres-XC version : Postgres-XC 1.1
>>
>> Compiler used : gcc 4.6.3, gcc 4.4.7
>>
>>
>> Please enter a FULL description of your problem:
>> ------------------------------------------------
>> I'm unable to build PGXC 1.1. What's odd is that several defines seem
>> not to be getting passed through the make files or environment variables
>> so even getting this far I had to define several things on the command line:
>>
>> atoth@dev1-pgxgtm0001:~/postgres-xc/src$ make FLEX=/usr/bin/flex
>> LDFLAGS="-L$PWD/port -pthread" CFLAGS="-DPGXC_VERSION='\"1.1\"'
>> -DPGXC_VERSION_STR='\"1.1\"' -DPGXC=1" BISON=/usr/bin/bison
>>
>> which leads to:
>> make[2]: Leaving directory `/home/atoth/postgres-xc/src/interfaces/libpq'
>> cat: ../../src/interfaces/libpq/objfiles.txt: No such file or directory
>> gcc -DPGXC_VERSION='"1.1"' -DPGXC_VERSION_STR='"1.1"' -DPGXC=1
>> -L/home/atoth/postgres-xc/src/port -pthread -L../../src/gtm/libpg
>> -Wl,-E access/common/heaptuple.o access/common/indextuple.o
>> access/common/printtup.o access/common/reloptions.o
>> access/common/scankey.o access/common/tupconvert.o
>> access/common/tupdesc.o access/gist/gist.o access/gist/gistutil.o
>> access/gist/gistxlog.o access/gist/gistvacuum.o access/gist/gistget.o
>> access/gist/gistscan.o access/gist/gistproc.o access/gist/gistsplit.o
>> access/gist/gistbuild.o access/gist/gistbuildbuffers.o
>> access/hash/hash.o access/hash/hashfunc.o access/hash/hashinsert.o
>> access/hash/hashovfl.o access/hash/hashpage.o access/hash/hashscan.o
>> access/hash/hashsearch.o access/hash/hashsort.o access/hash/hashutil.o
>> access/heap/heapam.o access/heap/hio.o access/heap/pruneheap.o
>> access/heap/rewriteheap.o access/heap/syncscan.o
>> access/heap/tuptoaster.o access/heap/visibilitymap.o
>> access/index/genam.o access/index/indexam.o access/nbtree/nbtcompare.o
>> access/nbtree/nbtinsert.o access/nbtree/nbtpage.o access/nbtree/nbtree.o
>> access/nbtree/nbtsearch.o access/nbtree/nbtutils.o
>> access/nbtree/nbtsort.o access/nbtree/nbtxlog.o access/transam/clog.o
>> access/transam/transam.o access/transam/varsup.o access/transam/xact.o
>> access/transam/rmgr.o access/transam/slru.o access/transam/subtrans.o
>> access/transam/multixact.o access/transam/twophase.o
>> access/transam/twophase_rmgr.o access/transam/xlog.o
>> access/transam/xlogfuncs.o access/transam/xlogutils.o
>> access/transam/gtm.o access/gin/ginutil.o access/gin/gininsert.o
>> access/gin/ginxlog.o access/gin/ginentrypage.o access/gin/gindatapage.o
>> access/gin/ginbtree.o access/gin/ginscan.o access/gin/ginget.o
>> access/gin/ginvacuum.o access/gin/ginarrayproc.o access/gin/ginbulk.o
>> access/gin/ginfast.o access/spgist/spgutils.o access/spgist/spginsert.o
>> access/spgist/spgscan.o access/spgist/spgvacuum.o
>> access/spgist/spgdoinsert.o access/spgist/spgxlog.o
>> access/spgist/spgtextproc.o access/spgist/spgquadtreeproc.o
>> access/spgist/spgkdtreeproc.o bootstrap/bootparse.o
>> bootstrap/bootstrap.o catalog/catalog.o catalog/dependency.o
>> catalog/heap.o catalog/index.o catalog/indexing.o catalog/namespace.o
>> catalog/aclchk.o catalog/objectaddress.o catalog/pg_aggregate.o
>> catalog/pg_collation.o catalog/pg_constraint.o catalog/pg_conversion.o
>> catalog/pg_depend.o catalog/pg_enum.o catalog/pg_inherits.o
>> catalog/pg_largeobject.o catalog/pg_namespace.o catalog/pg_operator.o
>> catalog/pg_proc.o catalog/pg_range.o catalog/pg_db_role_setting.o
>> catalog/pg_shdepend.o catalog/pg_type.o catalog/pgxc_class.o
>> catalog/storage.o catalog/toasting.o parser/analyze.o parser/gram.o
>> parser/keywords.o parser/kwlookup.o parser/parser.o parser/parse_agg.o
>> parser/parse_clause.o parser/parse_coerce.o parser/parse_collate.o
>> parser/parse_cte.o parser/parse_expr.o parser/parse_func.o
>> parser/parse_node.o parser/parse_oper.o parser/parse_param.o
>> parser/parse_relation.o parser/parse_target.o parser/parse_type.o
>> parser/parse_utilcmd.o parser/scansup.o commands/aggregatecmds.o
>> commands/alter.o commands/analyze.o commands/async.o commands/cluster.o
>> commands/comment.o commands/collationcmds.o commands/constraint.o
>> commands/conversioncmds.o commands/copy.o commands/createas.o
>> commands/dbcommands.o commands/define.o commands/discard.o
>> commands/dropcmds.o commands/explain.o commands/extension.o
>> commands/foreigncmds.o commands/functioncmds.o commands/indexcmds.o
>> commands/lockcmds.o commands/operatorcmds.o commands/opclasscmds.o
>> commands/portalcmds.o commands/prepare.o commands/proclang.o
>> commands/schemacmds.o commands/seclabel.o commands/sequence.o
>> commands/tablecmds.o commands/tablespace.o commands/trigger.o
>> commands/tsearchcmds.o commands/typecmds.o commands/user.o
>> commands/vacuum.o commands/vacuumlazy.o commands/variable.o
>> commands/view.o executor/execAmi.o executor/execCurrent.o
>> executor/execGrouping.o executor/execJunk.o executor/execMain.o
>> executor/execProcnode.o executor/execQual.o executor/execScan.o
>> executor/execTuples.o executor/execUtils.o executor/functions.o
>> executor/instrument.o executor/nodeAppend.o executor/nodeAgg.o
>> executor/nodeBitmapAnd.o executor/nodeBitmapOr.o
>> executor/nodeBitmapHeapscan.o executor/nodeBitmapIndexscan.o
>> executor/nodeHash.o executor/nodeHashjoin.o executor/nodeIndexscan.o
>> executor/nodeIndexonlyscan.o executor/nodeLimit.o
>> executor/nodeLockRows.o executor/nodeMaterial.o
>> executor/nodeMergeAppend.o executor/nodeMergejoin.o
>> executor/nodeModifyTable.o executor/nodeNestloop.o
>> executor/nodeFunctionscan.o executor/nodeRecursiveunion.o
>> executor/nodeResult.o executor/nodeSeqscan.o executor/nodeSetOp.o
>> executor/nodeSort.o executor/nodeUnique.o executor/nodeValuesscan.o
>> executor/nodeCtescan.o executor/nodeWorktablescan.o executor/nodeGroup.o
>> executor/nodeSubplan.o executor/nodeSubqueryscan.o
>> executor/nodeTidscan.o executor/nodeForeignscan.o
>> executor/nodeWindowAgg.o executor/tstoreReceiver.o executor/spi.o
>> foreign/foreign.o lib/dllist.o lib/stringinfo.o libpq/be-fsstubs.o
>> libpq/be-secure.o libpq/auth.o libpq/crypt.o libpq/hba.o libpq/ip.o
>> libpq/md5.o libpq/pqcomm.o libpq/pqformat.o libpq/pqsignal.o
>> pgxc/locator/locator.o pgxc/locator/redistrib.o pgxc/pool/pgxcnode.o
>> pgxc/pool/execRemote.o pgxc/pool/poolmgr.o pgxc/pool/poolcomm.o
>> pgxc/pool/poolutils.o pgxc/barrier/barrier.o pgxc/nodemgr/nodemgr.o
>> pgxc/nodemgr/groupmgr.o pgxc/copy/copyops.o pgxc/copy/remotecopy.o
>> pgxc/xc_maintenance_mode/xc_maintenance_mode.o main/main.o
>> nodes/nodeFuncs.o nodes/nodes.o nodes/list.o nodes/bitmapset.o
>> nodes/tidbitmap.o nodes/copyfuncs.o nodes/equalfuncs.o nodes/makefuncs.o
>> nodes/outfuncs.o nodes/readfuncs.o nodes/print.o nodes/read.o
>> nodes/params.o nodes/value.o optimizer/geqo/geqo_copy.o
>> optimizer/geqo/geqo_eval.o optimizer/geqo/geqo_main.o
>> optimizer/geqo/geqo_misc.o optimizer/geqo/geqo_mutation.o
>> optimizer/geqo/geqo_pool.o optimizer/geqo/geqo_random.o
>> optimizer/geqo/geqo_recombination.o optimizer/geqo/geqo_selection.o
>> optimizer/geqo/geqo_erx.o optimizer/geqo/geqo_pmx.o
>> optimizer/geqo/geqo_cx.o optimizer/geqo/geqo_px.o
>> optimizer/geqo/geqo_ox1.o optimizer/geqo/geqo_ox2.o
>> optimizer/path/allpaths.o optimizer/path/clausesel.o
>> optimizer/path/costsize.o optimizer/path/equivclass.o
>> optimizer/path/indxpath.o optimizer/path/joinpath.o
>> optimizer/path/joinrels.o optimizer/path/orindxpath.o
>> optimizer/path/pathkeys.o optimizer/path/tidpath.o
>> optimizer/path/pgxcpath.o optimizer/plan/analyzejoins.o
>> optimizer/plan/createplan.o optimizer/plan/initsplan.o
>> optimizer/plan/planagg.o optimizer/plan/planmain.o
>> optimizer/plan/planner.o optimizer/plan/setrefs.o
>> optimizer/plan/subselect.o optimizer/plan/pgxcplan.o
>> optimizer/prep/prepjointree.o optimizer/prep/prepqual.o
>> optimizer/prep/preptlist.o optimizer/prep/prepunion.o
>> optimizer/util/clauses.o optimizer/util/joininfo.o
>> optimizer/util/pathnode.o optimizer/util/placeholder.o
>> optimizer/util/plancat.o optimizer/util/predtest.o
>> optimizer/util/relnode.o optimizer/util/restrictinfo.o
>> optimizer/util/tlist.o optimizer/util/var.o optimizer/util/pgxcship.o
>> port/dynloader.o port/pg_sema.o port/pg_shmem.o port/pg_latch.o
>> postmaster/autovacuum.o postmaster/bgwriter.o postmaster/fork_process.o
>> postmaster/pgarch.o postmaster/pgstat.o postmaster/postmaster.o
>> postmaster/startup.o postmaster/syslogger.o postmaster/walwriter.o
>> postmaster/checkpointer.o regex/regcomp.o regex/regerror.o
>> regex/regexec.o regex/regfree.o regex/regprefix.o
>> replication/walsender.o replication/walreceiverfuncs.o
>> replication/walreceiver.o replication/basebackup.o
>> replication/repl_gram.o replication/syncrep.o rewrite/rewriteRemove.o
>> rewrite/rewriteDefine.o rewrite/rewriteHandler.o rewrite/rewriteManip.o
>> rewrite/rewriteSupport.o storage/buffer/buf_table.o
>> storage/buffer/buf_init.o storage/buffer/bufmgr.o
>> storage/buffer/freelist.o storage/buffer/localbuf.o storage/file/fd.o
>> storage/file/buffile.o storage/file/copydir.o storage/file/reinit.o
>> storage/freespace/freespace.o storage/freespace/fsmpage.o
>> storage/freespace/indexfsm.o storage/ipc/ipc.o storage/ipc/ipci.o
>> storage/ipc/pmsignal.o storage/ipc/procarray.o storage/ipc/procsignal.o
>> storage/ipc/shmem.o storage/ipc/shmqueue.o storage/ipc/sinval.o
>> storage/ipc/sinvaladt.o storage/ipc/standby.o
>> storage/large_object/inv_api.o storage/lmgr/lmgr.o storage/lmgr/lock.o
>> storage/lmgr/proc.o storage/lmgr/deadlock.o storage/lmgr/lwlock.o
>> storage/lmgr/spin.o storage/lmgr/s_lock.o storage/lmgr/predicate.o
>> storage/page/bufpage.o storage/page/itemptr.o storage/smgr/md.o
>> storage/smgr/smgr.o storage/smgr/smgrtype.o tcop/dest.o tcop/fastpath.o
>> tcop/postgres.o tcop/pquery.o tcop/utility.o tsearch/ts_locale.o
>> tsearch/ts_parse.o tsearch/wparser.o tsearch/wparser_def.o
>> tsearch/dict.o tsearch/dict_simple.o tsearch/dict_synonym.o
>> tsearch/dict_thesaurus.o tsearch/dict_ispell.o tsearch/regis.o
>> tsearch/spell.o tsearch/to_tsany.o tsearch/ts_selfuncs.o
>> tsearch/ts_typanalyze.o tsearch/ts_utils.o utils/adt/acl.o
>> utils/adt/arrayfuncs.o utils/adt/array_selfuncs.o
>> utils/adt/array_typanalyze.o utils/adt/array_userfuncs.o
>> utils/adt/arrayutils.o utils/adt/bool.o utils/adt/cash.o
>> utils/adt/char.o utils/adt/date.o utils/adt/datetime.o utils/adt/datum.o
>> utils/adt/domains.o utils/adt/enum.o utils/adt/float.o
>> utils/adt/format_type.o utils/adt/geo_ops.o utils/adt/geo_selfuncs.o
>> utils/adt/int.o utils/adt/int8.o utils/adt/json.o utils/adt/like.o
>> utils/adt/lockfuncs.o utils/adt/misc.o utils/adt/nabstime.o
>> utils/adt/name.o utils/adt/numeric.o utils/adt/numutils.o
>> utils/adt/oid.o utils/adt/oracle_compat.o utils/adt/pseudotypes.o
>> utils/adt/rangetypes.o utils/adt/rangetypes_gist.o utils/adt/rowtypes.o
>> utils/adt/regexp.o utils/adt/regproc.o utils/adt/ruleutils.o
>> utils/adt/selfuncs.o utils/adt/tid.o utils/adt/timestamp.o
>> utils/adt/varbit.o utils/adt/varchar.o utils/adt/varlena.o
>> utils/adt/version.o utils/adt/xid.o utils/adt/network.o utils/adt/mac.o
>> utils/adt/inet_cidr_ntop.o utils/adt/inet_net_pton.o
>> utils/adt/ri_triggers.o utils/adt/pg_lzcompress.o utils/adt/pg_locale.o
>> utils/adt/formatting.o utils/adt/ascii.o utils/adt/quote.o
>> utils/adt/pgstatfuncs.o utils/adt/encode.o utils/adt/dbsize.o
>> utils/adt/genfile.o utils/adt/trigfuncs.o utils/adt/tsginidx.o
>> utils/adt/tsgistidx.o utils/adt/tsquery.o utils/adt/tsquery_cleanup.o
>> utils/adt/tsquery_gist.o utils/adt/tsquery_op.o
>> utils/adt/tsquery_rewrite.o utils/adt/tsquery_util.o utils/adt/tsrank.o
>> utils/adt/tsvector.o utils/adt/tsvector_op.o utils/adt/tsvector_parser.o
>> utils/adt/txid.o utils/adt/uuid.o utils/adt/windowfuncs.o
>> utils/adt/xml.o utils/cache/attoptcache.o utils/cache/catcache.o
>> utils/cache/inval.o utils/cache/plancache.o utils/cache/relcache.o
>> utils/cache/relmapper.o utils/cache/spccache.o utils/cache/syscache.o
>> utils/cache/lsyscache.o utils/cache/typcache.o utils/cache/ts_cache.o
>> utils/error/assert.o utils/error/elog.o utils/fmgr/dfmgr.o
>> utils/fmgr/fmgr.o utils/fmgr/funcapi.o utils/hash/dynahash.o
>> utils/hash/hashfn.o utils/init/globals.o utils/init/miscinit.o
>> utils/init/postinit.o utils/mb/encnames.o utils/mb/conv.o
>> utils/mb/mbutils.o utils/mb/wchar.o utils/mb/wstrcmp.o
>> utils/mb/wstrncmp.o utils/misc/guc.o utils/misc/help_config.o
>> utils/misc/pg_rusage.o utils/misc/ps_status.o utils/misc/superuser.o
>> utils/misc/tzparser.o utils/misc/rbtree.o utils/mmgr/aset.o
>> utils/mmgr/mcxt.o utils/mmgr/portalmem.o utils/resowner/resowner.o
>> utils/sort/logtape.o utils/sort/sortsupport.o utils/sort/tuplesort.o
>> utils/sort/tuplestore.o utils/time/combocid.o utils/time/tqual.o
>> utils/time/snapmgr.o utils/fmgrtab.o ../../src/timezone/localtime.o
>> ../../src/timezone/strftime.o ../../src/timezone/pgtz.o
>> ../../src/interfaces/libpq/fe-connect.o
>> ../../src/interfaces/libpq/fe-secure.o
>> ../../src/interfaces/libpq/fe-misc.o
>> ../../src/interfaces/libpq/fe-protocol3.o
>> ../../src/interfaces/libpq/fe-protocol2.o
>> ../../src/interfaces/libpq/fe-exec.o
>> ../../src/interfaces/libpq/fe-auth.o
>> ../../src/interfaces/libpq/pqexpbuffer.o ../../src/port/libpgport_srv.a
>> ../../src/gtm/client/libgtmclient.a ../../src/gtm/common/libgtmcommon.a
>> ../../src/interfaces/libpq/libpq.a -lxslt -lxml2 -lpam -lssl -lcrypto
>> -lcrypt -ldl -lm -lldap -o postgres
>> access/transam/xact.o: In function `AssignTransactionId':
>> xact.c:(.text+0x1f0): undefined reference to `threadinfo_key'
>> xact.c:(.text+0x313): undefined reference to `threadinfo_key'
>> xact.c:(.text+0x34b): undefined reference to `threadinfo_key'
>> xact.c:(.text+0x385): undefined reference to `threadinfo_key'
>> xact.c:(.text+0x3bb): undefined reference to `threadinfo_key'
>> access/transam/xact.o:xact.c:(.text+0x948): more undefined references to
>> `threadinfo_key' follow
>> collect2: ld returned 1 exit status
>> make[1]: *** [postgres] Error 1
>>
>>
>> The thing is, threadinfo_key is reference several places but I'm not
>> sure which one it's looking for, here, without some heavy code diving.
>> The configure script did complain about autoconf not being version 2.6
>> (it's 2.63). Perhaps that's what's in the missing objfiles.txt, but
>> none of the source files in that directory reference threadinfo_key so
>> I'm skeptical.
>>
>>
>>
>>
>> Please describe a way to repeat the problem. Please try to provide a
>> concise reproducible example, if at all possible:
>> ----------------------------------------------------------------------
>> Try a clean build on Ubuntu 12.04 (with its requisite
>> autoconf/flex/bison. Here's my configure command:
>> ./configure --with-perl --with-openssl --with-pam --with-ldap \
>> --with-ossp-uuid --with-libxml --with-libxslt
>> --disable-thread-safety
>>
>> The last option was specifically because the configure script said I
>> needed it.
>>
>>
>> If you know how this problem might be fixed, list the solution below:
>> ---------------------------------------------------------------------*
>>
>>
>>
>> ------------------------------------------------------------------------------
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> ------------------------------------------------------------------------------
> Rapidly troubleshoot problems before they affect your business. Most IT
> organizations don't have a clear picture of how application performance
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> Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro!
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