#48 Fst for specific positions

[Renan Granado]

Hi!

I successfully obtained the fst and fet file while using my whole genome data. However, now I want to calculate the Fst using some specific positions I got from my sync file. For that, I created a text file with the same formatting and info of the whole-genome sync file and tried to run using the same command, but it didn't work. There are no error message, it actually shows up as done, but the fst file is always empty. I have 76 positions/ lines in the "new" sync file. Should I do something different?

For the record, I did the same with pi, theta and D, where I extracted the info from the windows my positions are, and it worked fine.

Thank you!

[Tatereal]

Yes I also created a text file with the same formatting and info of the whole-genome sync file and tried to run using the same command, but it didn't work.