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Home modified by Robert Kofler

Robert Kofler — Wed, 03 Aug 2016 05:13:51 -0000

--- v43
+++ v44
@@ -33,7 +33,7 @@
 #Cite#
 PoPoolationTE2:  comparative population genomics of transposable elements using Pool-Seq
 Robert Kofler, Daniel Gomez-Sanchez, Christian Schloetterer (in press) Molecular Biology and Evolution
-Available on biorXiv http://biorxiv.org/content/early/2016/02/03/038745
+http://mbe.oxfordjournals.org/content/early/2016/07/22/molbev.msw137.abstract

 #Release history#
 * [ReleaseHistory]

Home modified by Robert Kofler

Robert Kofler — Sat, 25 Jun 2016 18:57:47 -0000

--- v42
+++ v43
@@ -32,7 +32,7 @@

 #Cite#
 PoPoolationTE2:  comparative population genomics of transposable elements using Pool-Seq
-Robert Kofler, Daniel Gomez-Sanchez, Christian Schloetterer
+Robert Kofler, Daniel Gomez-Sanchez, Christian Schloetterer (in press) Molecular Biology and Evolution
 Available on biorXiv http://biorxiv.org/content/early/2016/02/03/038745

 #Release history#

Home modified by Robert Kofler

Robert Kofler — Thu, 28 Apr 2016 13:55:01 -0000

--- v41
+++ v42
@@ -22,6 +22,7 @@
 * [signature file format] 
 * [TE insertion file] the final output - a file containing TE insertions for all samples
 * [diverse output files]  formats of diverse secondary output files
+* [TE-Benchmark] files for benchmarking tools for the identification of TE insertions from Pool-Seq data

 ## Walkthrough##

Home modified by Robert Kofler

Robert Kofler — Wed, 27 Apr 2016 09:22:43 -0000

--- v40
+++ v41
@@ -10,7 +10,7 @@
 * [Introduction and basic concepts]
 * [Manual] 
 * [DriverScripts] we provide driver scripts (shell scripts) for automating some of the workflows
-* [ComputingTime] overview of the required computing time with real data
+* [ComputingTime] overview of the required computing time using real Pool-Seq data
 * [FAQ]

Home modified by Robert Kofler

Robert Kofler — Tue, 26 Apr 2016 14:45:34 -0000

--- v39
+++ v40
@@ -10,7 +10,7 @@
 * [Introduction and basic concepts]
 * [Manual] 
 * [DriverScripts] we provide driver scripts (shell scripts) for automating some of the workflows
-* [ComputingTime] overview of the required computing time using real data
+* [ComputingTime] overview of the required computing time with real data
 * [FAQ]

Home modified by Robert Kofler

Robert Kofler — Tue, 26 Apr 2016 13:44:28 -0000

--- v38
+++ v39
@@ -10,6 +10,7 @@
 * [Introduction and basic concepts]
 * [Manual] 
 * [DriverScripts] we provide driver scripts (shell scripts) for automating some of the workflows
+* [ComputingTime] overview of the required computing time using real data
 * [FAQ]

Home modified by Robert Kofler

Robert Kofler — Tue, 26 Apr 2016 12:33:31 -0000

--- v37
+++ v38
@@ -9,6 +9,7 @@

 * [Introduction and basic concepts]
 * [Manual] 
+* [DriverScripts] we provide driver scripts (shell scripts) for automating some of the workflows
 * [FAQ]

@@ -20,7 +21,7 @@
 * [signature file format] 
 * [TE insertion file] the final output - a file containing TE insertions for all samples
 * [diverse output files]  formats of diverse secondary output files
-* [DriverScripts] we provide driver scripts (shell scripts) for automating some of the workflows
+

 ## Walkthrough##
 * [WalkthroughPreparatoryWork] demonstrates how the TE-merged-reference and the TE-hierarchy, two prerequisites for running  PoPoolationTE2, can be created

Home modified by Robert Kofler

Robert Kofler — Tue, 26 Apr 2016 12:32:55 -0000

--- v36
+++ v37
@@ -20,7 +20,7 @@
 * [signature file format] 
 * [TE insertion file] the final output - a file containing TE insertions for all samples
 * [diverse output files]  formats of diverse secondary output files
-* [DriverScripts] we provide some driver scripts (shell scripts) to automate some of the workflows
+* [DriverScripts] we provide driver scripts (shell scripts) for automating some of the workflows

 ## Walkthrough##
 * [WalkthroughPreparatoryWork] demonstrates how the TE-merged-reference and the TE-hierarchy, two prerequisites for running  PoPoolationTE2, can be created

Home modified by Robert Kofler

Robert Kofler — Tue, 26 Apr 2016 11:40:59 -0000

--- v35
+++ v36
@@ -20,11 +20,12 @@
 * [signature file format] 
 * [TE insertion file] the final output - a file containing TE insertions for all samples
 * [diverse output files]  formats of diverse secondary output files
+* [DriverScripts] we provide some driver scripts (shell scripts) to automate some of the workflows

 ## Walkthrough##
 * [WalkthroughPreparatoryWork] demonstrates how the TE-merged-reference and the TE-hierarchy, two prerequisites for running  PoPoolationTE2, can be created
 * [Walkthrough] demonstrates the usage of PoPoolationTE2 using a small sample dataset
-* [DriverScripts] we provide some driver scripts (shell scripts) to automate some of the workflows
+

 #Cite#
 PoPoolationTE2:  comparative population genomics of transposable elements using Pool-Seq

Home modified by Robert Kofler

Robert Kofler — Tue, 26 Apr 2016 11:40:20 -0000

--- v34
+++ v35
@@ -24,6 +24,7 @@
 ## Walkthrough##
 * [WalkthroughPreparatoryWork] demonstrates how the TE-merged-reference and the TE-hierarchy, two prerequisites for running  PoPoolationTE2, can be created
 * [Walkthrough] demonstrates the usage of PoPoolationTE2 using a small sample dataset
+* [DriverScripts] we provide some driver scripts (shell scripts) to automate some of the workflows

 #Cite#
 PoPoolationTE2:  comparative population genomics of transposable elements using Pool-Seq