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From: SourceForge.net <no...@so...> - 2012-12-03 15:49:06
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Documentation item #3588450, was opened at 2012-11-19 00:14 Message generated for change (Settings changed) made by val_wood You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3588450&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 6 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Antonia Lock (antonialock) Summary: help section for allele menu bar Initial Comment: More detailed "help section" to link from the menu bar to be written by curators transferred from https://sourceforge.net/tracker/?func=detail&atid=2525791&aid=3559870&group_id=65526 ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3588450&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2012-12-03 15:33:09
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Documentation item #3586400, was opened at 2012-11-12 10:06 Message generated for change (Settings changed) made by val_wood You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3586400&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Nobody/Anonymous (nobody) Summary: documentation for interactions Initial Comment: somehow need to make it clear that you can curate RNA's using affinity cature RNA, and the mRNA will be displayed http://www.ebi.ac.uk/panda/jira/browse/PB-873 here is an example http://curation.pombase.org/pombe/curs/9ffe6c54d2c9f419 ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3586400&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2012-10-08 23:09:08
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Documentation item #3479612, was opened at 2012-01-25 05:50 Message generated for change (Settings changed) made by val_wood You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3479612&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 3 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Nobody/Anonymous (nobody) Summary: assembly re-mapper documentation Initial Comment: Find out how this works, or at least if there is any documentation. test with one of the old assemblies on ftp site. Check documented in FAQ ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3479612&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2012-10-08 23:08:48
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Documentation item #3547792, was opened at 2012-07-23 22:46 Message generated for change (Settings changed) made by val_wood You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3547792&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Antonia Lock (antonialock) Summary: document allele descriptions for curation tool Initial Comment: this replaces Curator meeting item "need to document allele descriptions" and is related to https://sourceforge.net/tracker/?func=detail&atid=2525791&aid=3547604&group_id=65526 ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3547792&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2012-10-08 23:05:31
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Documentation item #3273979, was opened at 2011-04-04 05:34 Message generated for change (Comment added) made by val_wood You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3273979&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None >Status: Closed Resolution: None Priority: 3 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Nobody/Anonymous (nobody) Summary: Making genomic regions more easily accessible Initial Comment: I have had a couple of queries recently about locating centromeres, and a couple of queries abaout locating the mating type locus. These aren't easy to locate in GeneDB you can get to the separately annotated mating type region contig here http://old.genedb.org/genedb/ContigMap?organism=pombe I am just about to make misc features with SO ID fro centromeres SO:0000577 We do have individual centromere repeats annotated (dg, de etc) using the EMBL feature type repeat regoin ....... these should also be converted to SO terms/IDs (not the only existing children of centromeres in SO appear to be related to S. cerevisiae point centromeres and are not applicable to other organisms with modular centromeres). ---------------------------------------------------------------------- >Comment By: Valerie Wood (val_wood) Date: 2012-10-08 16:05 Message: The centromeres are accessible from the website and there is another item about more fine grained annotation ---------------------------------------------------------------------- Comment By: Valerie Wood (val_wood) Date: 2011-04-04 08:33 Message: Found this item on my old to do list which is related..... We will need to ask a centoromere expert about this. Maybe something we could do in Boston...... 96. centromere associated ntr centromere central core cnp1 mis6 bub1 (Saito 1997)/ centromere outer repeat region /centromere central core cut14 IDA ---------------------------------------------------------------------- Comment By: Valerie Wood (val_wood) Date: 2011-04-04 07:01 Message: Raise priority when PomBase released ---------------------------------------------------------------------- Comment By: Valerie Wood (val_wood) Date: 2011-04-04 07:00 Message: misc_features dbxref=SO:0000577 now added to each chromosome Still need to sort the repeats (low priority) ---------------------------------------------------------------------- Comment By: Valerie Wood (val_wood) Date: 2011-04-04 05:35 Message: Centromere coordinates in current assembly: chromosome 1 3753687..3789421 chromosome 2 1602264..1644747 chromosome 3 1070904..1137003 ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3273979&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2012-09-28 14:15:43
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Documentation item #2655181, was opened at 2009-03-02 10:47 Message generated for change (Comment added) made by gomidori You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=2655181&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None >Status: Closed >Resolution: Out of Date Priority: 2 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Nobody/Anonymous (nobody) Summary: GO announce pombelist (topics) Initial Comment: GO slims Reference geneomes - suggest targets GO tools and usage GO slim ---------------------------------------------------------------------- >Comment By: Midori Harris (gomidori) Date: 2012-09-28 07:15 Message: after 3.5 years we can open new items if we need 'em ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=2655181&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2012-09-28 14:15:07
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Documentation item #2654140, was opened at 2009-03-02 02:22 Message generated for change (Comment added) made by gomidori You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=2654140&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None >Status: Closed >Resolution: Out of Date Priority: 2 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Nobody/Anonymous (nobody) Summary: consistency checks and curation rules Initial Comment: Document all ---------------------------------------------------------------------- >Comment By: Midori Harris (gomidori) Date: 2012-09-28 07:15 Message: I think a lot of the wiki stuff supersedes this now (but reopen if you disagree) ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=2654140&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2012-08-31 16:11:17
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Documentation item #2645225, was opened at 2009-02-27 04:39 Message generated for change (Comment added) made by gomidori You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=2645225&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None >Status: Closed >Resolution: Out of Date Priority: 5 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Nobody/Anonymous (nobody) Summary: web site/ftp site updates Initial Comment: change order of columns in 'genes published' change biogrid colum to ingteractions add orphan characterised/uncharacterised to status page add link from ftp site to citing GO ---------------------------------------------------------------------- >Comment By: Midori Harris (gomidori) Date: 2012-08-31 09:11 Message: superseded by Jira ---------------------------------------------------------------------- Comment By: Valerie Wood (val_wood) Date: 2009-03-02 10:49 Message: tidy gene coordinate changes tidy new genes pages ---------------------------------------------------------------------- Comment By: Valerie Wood (val_wood) Date: 2009-03-02 05:18 Message: 1. Check all download files 2. Check all READmes 3. Check all archives 4. add links to data usage for downloads 5. check ftp site and remove all spurious files 6. make sure distinction between contig and EMBl download files is clear 7. add links to new coordinates and coordinate changes from sequence updates 9 citing the pombe data ' spurious "<' ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=2645225&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2012-08-31 16:08:40
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Documentation item #3334654, was opened at 2011-06-26 08:41 Message generated for change (Settings changed) made by gomidori You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3334654&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None >Status: Closed >Resolution: Out of Date Priority: 5 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Valerie Wood (val_wood) Summary: GO_REF documentation Initial Comment: write GO ref documentation to descrrbe ISS to ortholog ---------------------------------------------------------------------- >Comment By: Midori Harris (gomidori) Date: 2012-08-31 09:08 Message: ISS to ortholog: evidence ISO, GO_REF:0000024 remapping done in GAF but not embl files ISS to Pfam/InterPro: evidence ISM, GO_REF:0000050 remapping done in GAF but not embl files pombekw2go: GO_REF:0000051 remapping done in external GO data files ---------------------------------------------------------------------- Comment By: Valerie Wood (val_wood) Date: 2011-06-26 08:42 Message: Also for pombe KW mappings and then any others get Kim to remap these refs to the new ref ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3334654&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2012-08-31 16:00:47
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Documentation item #2655357, was opened at 2009-03-02 12:09 Message generated for change (Comment added) made by gomidori You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=2655357&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None >Status: Closed >Resolution: Out of Date Priority: 5 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Nobody/Anonymous (nobody) Summary: annotation protocol Initial Comment: update ---------------------------------------------------------------------- >Comment By: Midori Harris (gomidori) Date: 2012-08-31 09:00 Message: superseded by wiki https://sourceforge.net/apps/trac/pombase/wiki/CurationGuidelines https://sourceforge.net/apps/trac/pombase/wiki/GOAnnotationGuidelines ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=2655357&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2012-06-25 11:08:34
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Documentation item #3537713, was opened at 2012-06-25 04:08 Message generated for change (Tracker Item Submitted) made by antonialock You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3537713&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Antonia Lock (antonialock) Assigned to: Antonia Lock (antonialock) Summary: User guide for community curation Initial Comment: Make a user guide for community curation. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3537713&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2012-05-31 06:51:12
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Documentation item #3531001, was opened at 2012-05-30 23:51 Message generated for change (Tracker Item Submitted) made by antonialock You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3531001&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Antonia Lock (antonialock) Assigned to: Antonia Lock (antonialock) Summary: update phenotype section Initial Comment: on curation guidelines. Write new separate section + link in. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3531001&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2012-05-30 16:32:21
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Documentation item #3530460, was opened at 2012-05-29 02:29 Message generated for change (Comment added) made by gomidori You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3530460&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None >Status: Closed >Resolution: Accepted Priority: 5 Private: No Submitted By: Midori Harris (gomidori) Assigned to: Midori Harris (gomidori) Summary: FAQ item: GTF download Initial Comment: from Jira http://www.ebi.ac.uk/panda/jira/browse/PB-389 add how to download GTF from Ensembl to the FAQ whole genome link: http://genomebrowser.pombase.org/info/data/ftp/index.html ---------------------------------------------------------------------- >Comment By: Midori Harris (gomidori) Date: 2012-05-30 09:32 Message: done http://www.pombase.org/faq#t6n176 ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3530460&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2012-05-30 15:59:49
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Documentation item #3530208, was opened at 2012-05-28 03:29 Message generated for change (Comment added) made by gomidori You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3530208&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None >Status: Closed >Resolution: Accepted Priority: 5 Private: No Submitted By: Antonia Lock (antonialock) Assigned to: Midori Harris (gomidori) Summary: FAQ item: ncRNA Initial Comment: add an item on how to retrieve ncRNA either using this item as template or incorporate them http://www.pombase.org/faqs/how-can-i-find-snorna-genes ---------------------------------------------------------------------- >Comment By: Midori Harris (gomidori) Date: 2012-05-30 08:59 Message: done http://www.pombase.org/faqs/how-can-i-find-non-coding-rna-genes ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3530208&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2012-05-29 09:29:33
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Documentation item #3530460, was opened at 2012-05-29 02:29 Message generated for change (Tracker Item Submitted) made by gomidori You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3530460&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Midori Harris (gomidori) Assigned to: Midori Harris (gomidori) Summary: FAQ item: GTF download Initial Comment: from Jira http://www.ebi.ac.uk/panda/jira/browse/PB-389 add how to download GTF from Ensembl to the FAQ whole genome link: http://genomebrowser.pombase.org/info/data/ftp/index.html ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3530460&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2012-05-28 10:29:32
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Documentation item #3530208, was opened at 2012-05-28 03:29 Message generated for change (Tracker Item Submitted) made by antonialock You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3530208&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Antonia Lock (antonialock) Assigned to: Midori Harris (gomidori) Summary: FAQ item: ncRNA Initial Comment: add an item on how to retrieve ncRNA either using this item as template or incorporate them http://www.pombase.org/faqs/how-can-i-find-snorna-genes ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3530208&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2011-12-06 17:10:34
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Documentation item #3441737, was opened at 2011-11-24 02:27 Message generated for change (Settings changed) made by gomidori You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3441737&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None >Status: Closed >Resolution: Accepted Priority: 5 Private: No Submitted By: Midori Harris (gomidori) Assigned to: Midori Harris (gomidori) Summary: GO.xrf_abbs Initial Comment: add link to pombase wiki add pombase to file ---------------------------------------------------------------------- Comment By: Midori Harris (gomidori) Date: 2011-11-24 03:04 Message: done link is on "useful links" wiki page https://sourceforge.net/apps/trac/pombase/wiki/UsefulLinks ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3441737&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2011-11-24 11:04:48
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Documentation item #3441737, was opened at 2011-11-24 02:27 Message generated for change (Comment added) made by gomidori You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3441737&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Midori Harris (gomidori) Assigned to: Midori Harris (gomidori) Summary: GO.xrf_abbs Initial Comment: add link to pombase wiki add pombase to file ---------------------------------------------------------------------- >Comment By: Midori Harris (gomidori) Date: 2011-11-24 03:04 Message: done link is on "useful links" wiki page https://sourceforge.net/apps/trac/pombase/wiki/UsefulLinks ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3441737&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2011-11-24 10:27:50
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Documentation item #3441737, was opened at 2011-11-24 02:27 Message generated for change (Tracker Item Submitted) made by gomidori You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3441737&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Midori Harris (gomidori) Assigned to: Midori Harris (gomidori) Summary: GO.xrf_abbs Initial Comment: add link to pombase wiki add pombase to file ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3441737&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2011-11-17 21:29:28
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Documentation item #3273979, was opened at 2011-04-04 05:34 Message generated for change (Settings changed) made by val_wood You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3273979&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 3 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Nobody/Anonymous (nobody) Summary: Making genomic regions more easily accessible Initial Comment: I have had a couple of queries recently about locating centromeres, and a couple of queries abaout locating the mating type locus. These aren't easy to locate in GeneDB you can get to the separately annotated mating type region contig here http://old.genedb.org/genedb/ContigMap?organism=pombe I am just about to make misc features with SO ID fro centromeres SO:0000577 We do have individual centromere repeats annotated (dg, de etc) using the EMBL feature type repeat regoin ....... these should also be converted to SO terms/IDs (not the only existing children of centromeres in SO appear to be related to S. cerevisiae point centromeres and are not applicable to other organisms with modular centromeres). ---------------------------------------------------------------------- Comment By: Valerie Wood (val_wood) Date: 2011-04-04 08:33 Message: Found this item on my old to do list which is related..... We will need to ask a centoromere expert about this. Maybe something we could do in Boston...... 96. centromere associated ntr centromere central core cnp1 mis6 bub1 (Saito 1997)/ centromere outer repeat region /centromere central core cut14 IDA ---------------------------------------------------------------------- Comment By: Valerie Wood (val_wood) Date: 2011-04-04 07:01 Message: Raise priority when PomBase released ---------------------------------------------------------------------- Comment By: Valerie Wood (val_wood) Date: 2011-04-04 07:00 Message: misc_features dbxref=SO:0000577 now added to each chromosome Still need to sort the repeats (low priority) ---------------------------------------------------------------------- Comment By: Valerie Wood (val_wood) Date: 2011-04-04 05:35 Message: Centromere coordinates in current assembly: chromosome 1 3753687..3789421 chromosome 2 1602264..1644747 chromosome 3 1070904..1137003 ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3273979&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2011-07-17 21:56:34
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Documentation item #3324640, was opened at 2011-06-22 18:39 Message generated for change (Settings changed) made by val_wood You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3324640&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Nobody/Anonymous (nobody) Summary: update documetation for new genes/coord changes Initial Comment: Broad data not yet documented...add a single enrty to table for now ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3324640&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2011-06-26 15:42:40
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Documentation item #3334654, was opened at 2011-06-26 15:41 Message generated for change (Comment added) made by val_wood You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3334654&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Valerie Wood (val_wood) Summary: GO_REF documentation Initial Comment: write GO ref documentation to descrrbe ISS to ortholog ---------------------------------------------------------------------- >Comment By: Valerie Wood (val_wood) Date: 2011-06-26 15:42 Message: Also for pombe KW mappings and then any others get Kim to remap these refs to the new ref ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3334654&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2011-06-26 15:41:54
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Documentation item #3334654, was opened at 2011-06-26 15:41 Message generated for change (Tracker Item Submitted) made by val_wood You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3334654&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Valerie Wood (val_wood) Summary: GO_REF documentation Initial Comment: write GO ref documentation to descrrbe ISS to ortholog ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=3334654&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2011-06-20 08:38:03
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Documentation item #2654140, was opened at 2009-03-02 10:22 Message generated for change (Settings changed) made by val_wood You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=2654140&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 2 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Nobody/Anonymous (nobody) Summary: consistency checks and curation rules Initial Comment: Document all ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=2654140&group_id=65526 |
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From: SourceForge.net <no...@so...> - 2011-06-20 08:36:26
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Documentation item #2645225, was opened at 2009-02-27 12:39 Message generated for change (Settings changed) made by val_wood You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=2645225&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Nobody/Anonymous (nobody) Summary: web site/ftp site updates Initial Comment: change order of columns in 'genes published' change biogrid colum to ingteractions add orphan characterised/uncharacterised to status page add link from ftp site to citing GO ---------------------------------------------------------------------- Comment By: Valerie Wood (val_wood) Date: 2009-03-02 18:49 Message: tidy gene coordinate changes tidy new genes pages ---------------------------------------------------------------------- Comment By: Valerie Wood (val_wood) Date: 2009-03-02 13:18 Message: 1. Check all download files 2. Check all READmes 3. Check all archives 4. add links to data usage for downloads 5. check ftp site and remove all spurious files 6. make sure distinction between contig and EMBl download files is clear 7. add links to new coordinates and coordinate changes from sequence updates 9 citing the pombe data ' spurious "<' ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096404&aid=2645225&group_id=65526 |