From: SourceForge.net <no...@so...> - 2012-11-28 20:00:32
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Curation tasks item #3588698, was opened at 2012-11-20 01:24 Message generated for change (Settings changed) made by val_wood You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096421&aid=3588698&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Valerie Wood (val_wood) >Summary: migrate spindle pole to mitotic/meiotic spindle pole Initial Comment: most, but not all of the 214 genes annotated to GO:0005816 - spindle pole body should be moved down to +id: GO:0097431 +name: mitotic spindle pole (some are meiosis specific, should be easy to work out) step 1, fix those from the HTP screen by search and replace of the tem ID in the static file step 2 identifyl meiosis specific step3 search and replace term ID in artemis step4 fix any meiosis specifc manually (add to remapping file for chado loading) step 4 wait for one update cycle stp2 query for remainder and fix manually (should all be in curation tool) (actually may be a little tricker as direct annotations are not to spindle pole, but to children, will work out later....) ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096421&aid=3588698&group_id=65526 |
From: SourceForge.net <no...@so...> - 2012-11-28 20:18:58
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Curation tasks item #3588698, was opened at 2012-11-20 01:24 Message generated for change (Comment added) made by val_wood You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096421&aid=3588698&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Valerie Wood (val_wood) Summary: migrate spindle pole to mitotic/meiotic spindle pole Initial Comment: most, but not all of the 214 genes annotated to GO:0005816 - spindle pole body should be moved down to +id: GO:0097431 +name: mitotic spindle pole (some are meiosis specific, should be easy to work out) step 1, fix those from the HTP screen by search and replace of the tem ID in the static file step 2 identifyl meiosis specific step3 search and replace term ID in artemis step4 fix any meiosis specifc manually (add to remapping file for chado loading) step 4 wait for one update cycle stp2 query for remainder and fix manually (should all be in curation tool) (actually may be a little tricker as direct annotations are not to spindle pole, but to children, will work out later....) ---------------------------------------------------------------------- >Comment By: Valerie Wood (val_wood) Date: 2012-11-28 12:18 Message: have done step 1 by remapping GO:0005816 in /pombe-embl/external-go-data/GO_ORFeome_localizations2.txt to GO:0044732 will proceed after the next update ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096421&aid=3588698&group_id=65526 |