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[Pombase-curation-tool] [ pombase-Curation tool-3564994 ] bug: error editing phenotype
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From: SourceForge.net <no...@so...> - 2012-12-03 15:46:54
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Curation tool item #3564994, was opened at 2012-09-05 05:26 Message generated for change (Comment added) made by val_wood You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2525791&aid=3564994&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None >Status: Closed >Resolution: Duplicate Priority: 2 Private: No Submitted By: Midori Harris (gomidori) Assigned to: Kim Rutherford (kim_rutherford) Summary: bug: error editing phenotype Initial Comment: I tried to edit a phenotype annotation to add a condition, and it all seemed to go fine until I hit 'add', and got this: Internal error DBIx::Class::ResultSet::delete(): DBI Exception: DBD::SQLite::st execute failed: database is locked [for Statement "DELETE FROM cursprop WHERE ( ( ( curs = ? AND type = ? ) AND curs = ? ) )"] at lib/PomCur/Track/StatusStorage.pm line 109 Error There has been an internal error. The problem has been logged and will be investigated. It's http://curation.pombase.org/pombe/curs/982304b134332abd/annotation/process_alleles/18 ---------------------------------------------------------------------- >Comment By: Valerie Wood (val_wood) Date: 2012-12-03 07:46 Message: see https://sourceforge.net/tracker/index.php?func=detail&aid=3549162&group_id=65526&atid=2525791 ---------------------------------------------------------------------- Comment By: Valerie Wood (val_wood) Date: 2012-12-03 03:34 Message: will raise if we have another occurence ---------------------------------------------------------------------- Comment By: Valerie Wood (val_wood) Date: 2012-11-11 08:43 Message: please raise if/when this happens again ---------------------------------------------------------------------- Comment By: Midori Harris (gomidori) Date: 2012-09-07 04:25 Message: Will do. I think I submitted this ticket pretty soon after it happened, if that helps at all. ---------------------------------------------------------------------- Comment By: Kim Rutherford (kim_rutherford) Date: 2012-09-07 04:23 Message: This is one of the "I don't know how that can happen" problems. If you see it again, could you email me directly and I'll investigate it straight away. I'm more likely to be able to solve it that way. Thanks. ---------------------------------------------------------------------- Comment By: Midori Harris (gomidori) Date: 2012-09-05 05:27 Message: rather oddly, when I went back to the paper summary page, the annotation was there and edited as I intended ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2525791&aid=3564994&group_id=65526 |