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[Pombase-curation-tasks] [ pombase-Curation tasks-3587172 ] sort these before next EMBL submission
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From: SourceForge.net <no...@so...> - 2012-11-14 17:38:35
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Curation tasks item #3587172, was opened at 2012-11-14 09:38 Message generated for change (Tracker Item Submitted) made by val_wood You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096421&aid=3587172&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Nobody/Anonymous (nobody) Summary: sort these before next EMBL submission Initial Comment: Chr 1: ==== WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: pyruvate decarboxylase (predicted) [(emb|CU329670.1|:c103544- 101872, c101869-101836)] -> [emb|CAB03601.3|] [gi|159883886|emb|CU329670.1|: delta, dna len= 5579133] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: conserved fungal protein [(emb|CU329670.1|:2499035-2499159, 2499161- 2499353, 2499443-2499824, 2499875-2500236)] - > [emb|CAB16233.3|] [gi|159883886|emb|CU329670.1|: delta, dna len= 5579133] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: rRNA processing protein Rrp36, DUF947 family (predicted) [(emb|CU329670.1|:2587729-2587897, 2587952- 2588028, 2588031-2588143, 2588182-2588620)] - > [emb|CAB90149.3|] [gi|159883886|emb|CU329670.1|: delta, dna len= 5579133] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: kinetochore protein Nnf1 [(emb|CU329670.1|:4409773-4410192, 4410194- 4410391)] -> [emb|CAB66467.2|] [gi|159883886|emb|CU329670.1|: delta, dna len= 5579133] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: mitochondrial ribosomal protein subunit Mrps9 (predicted) [(emb|CU329670.1|:5142407-5142628, 5142631- 5143224)] -> [emb|CAB10130.2|] [gi|159883886|emb|CU329670.1|: delta, dna len= 5579133] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329670.1|:c1485023- 1485015] [gi|159883886|emb|CU329670.1|: delta, dna len= 5579133] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329670.1|:1704621- 1704628] [gi|159883886|emb|CU329670.1|: delta, dna len= 5579133] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329670.1|:c2214776- 2214769] [gi|159883886|emb|CU329670.1|: delta, dna len= 5579133] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329670.1|:c2684726- 2684719] [gi|159883886|emb|CU329670.1|: delta, dna len= 5579133] Chr 2: ==== WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: ornithine decarboxylase antizyme with +1 programmed ribosomal frameshift Spa1 [(emb|CU329671.1|:c779869- 779669, c779667-779188)] -> [emb|CAB54822.2|] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: translation initiation factor eIF3 alpha subunit (p135) (predicted) [(emb|CU329671.1|:c802851-802839, c802651- 800840, c800838-799142)] -> [emb|CAA19172.3|] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: cell surface glycoprotein (predicted), DUF1773 family protein 6 [(emb|CU329671.1|:c1033776-1033610, c1033607- 1032857)] -> [emb|CAO77661.2|] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: Lsd90 protein [(emb|CU329671.1|:c1950255-1950053, c1950050- 1948955, c1948953-1947985)] -> [emb|CAB16908.4|] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: mitochondrial matrix protein import protein Tam41 (predicted) [(emb|CU329671.1|:c1988353-1988081, c1988015- 1987737, c1987675-1987102, c1987099- 1987044)] -> [emb|CAA20110.3|] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: CGI-48 family (predicted) [(emb|CU329671.1|:2048336-2049892, 2049894- 2049896)] -> [emb|CAA18383.2|] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: elongin-A, F-box protein Pof4 (predicted) [(emb|CU329671.1|:2053033- 2053517, 2053519-2053600)] -> [emb|CAA18385.2|] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: conserved eukaryotic protein [(emb|CU329671.1|:c2108786-2108181, c2108178- 2106448)] -> [emb|CAA22622.3|] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: IMPACT domain protein, involved in translation (predicted) [(emb|CU329671.1|:c2220322-2219937, c2219934- 2219430)] -> [emb|CAA18427.3|] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: guanyl-nucleotide exchange factor Vps901 (predicted) [(emb|CU329671.1|:2708076-2709415, 2709418- 2709793)] -> [emb|CAA20730.2|] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: splicing factor Cwf22 [(emb|CU329671.1|:3037988-3040331, 3040334- 3040650)] -> [emb|CAA20491.4|] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329671.1|:c1598117- 1598111] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329671.1|:1598549- 1598558] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329671.1|:1599745- 1599752] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329671.1|:c1601011- 1601003] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329671.1|:1629197- 1629205] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329671.1|:1643887- 1643896] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329671.1|:1645083- 1645090] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329671.1|:c1646349- 1646341] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329671.1|:3814173- 3814180] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329671.1|:3814596- 3814605] [gi|157310380|emb|CU329671.1|: delta, dna len= 4539804] Chr 3: ==== WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: wtf element Wtf12 [(emb|CU329672.1|:1401530-1401668, 1401900- 1402172, 1402490-1402551, 1402553-1402672)] - > [emb|CAB63875.2|] [gi|157310483|emb|CU329672.1|: delta, dna len= 2452883] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: CDS: meiotic recombination protein (predicted) [(emb|CU329672.1|:c1775429- 1774236, c1774233-1773925)] -> [emb|CAA21438.3|] [gi|157310483|emb|CU329672.1|: delta, dna len= 2452883] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329672.1|:1092972- 1092980] [gi|157310483|emb|CU329672.1|: delta, dna len= 2452883] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329672.1|:c1106022- 1106014] [gi|157310483|emb|CU329672.1|: delta, dna len= 2452883] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329672.1|:c1139579- 1139572] [gi|157310483|emb|CU329672.1|: delta, dna len= 2452883] WARN SEQ_FEAT ShortIntron Introns should be at least 10 nt long FEATURE: intron: [emb|CU329672.1|:1475073- 1475080] [gi|157310483|emb|CU329672.1|: delta, dna len= 2452883] ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096421&aid=3587172&group_id=65526 |