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[Pombase-curation-tasks] [ pombase-Curation tasks-3577859 ] unknowns
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From: SourceForge.net <no...@so...> - 2012-10-17 16:30:51
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Curation tasks item #3577859, was opened at 2012-10-17 09:30 Message generated for change (Tracker Item Submitted) made by val_wood You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096421&aid=3577859&group_id=65526 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Valerie Wood (val_wood) Assigned to: Nobody/Anonymous (nobody) Summary: unknowns Initial Comment: reference only I went through the "unknowns" list at the weekend and was able to update the following to inferred biological role: some they all changed from status 10 to 7 SPBC1703.03c /GO="aspect=P; term=ribosomal large subunit biogenesis; GOid=GO:0042273; evidence=ISS; db_xref=GO_REF:0000001; with=SGD:S000002221; date=20121013" /primary_name=lin1 /synonym=snu40 /product="U5 snRNP subunit Snu40" /GO="aspect=C; term=snRNP U5; GOid=GO:0005682; evidence=ISS; db_xref=GO_REF:0000001; with=SGD:S000001199; date=20060802" /GO="aspect=P; term=assembly of spliceosomal tri-snRNP; GOid=GO:0000244; evidence=ISS; db_xref=GO_REF:0000001; with=UniProtKB:O95400; date=20121013" /GO="aspect=C; term=U5 snRNP; GOid=GO:0005682; evidence=ISS; db_xref=GO_REF:0000001; with=UniProtKB:O95400; date=20121013" /primary_name=lin1 /synonym=snu40 /product="U5 snRNP subunit Snu40" /product="cactin, spliceosome complex subunit (predicted)" /systematic_id="SPBC2F12.12c" /GO="aspect=C; term=catalytic step 2 spliceosome; GOid=GO:0071013; evidence=ISS; db_xref=GO_REF:0000001; with=UniProtKB:Q8WUQ7; date=20121013" /GO="aspect=P; term=nuclear mRNA splicing, via spliceosome; GOid=GO:0000398; evidence=ISS; db_xref=GO_REF:0000001; from=GO:0071013; date=20121013" /systematic_id="SPCC18.15" /product="WD repeat protein, involved in diphthamide biosynthesis" /GO="aspect=P; term=endocytic recycling; GOid=GO:0032456; evidence=ISS; db_xref=GO_REF:0000001; with=SGD:S000000450; date=20120703" /GO="aspect=P; term=peptidyl-diphthamide biosynthetic process from peptidyl-histidine; GOid=GO:0017183; evidence=ISS; db_xref=GO_REF:0000001; with=SGD:S000000450; date=20120703" /primary_name="rtt10" /systematic_id="SPBC1306.02" /product="WD repeat protein, human WDR6 family, involved in endocytic recycling" /synonym="SPBC4.08" /controlled_curation="term=phenotype, viable; allele=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" /GO="aspect=C; term=endosome; GOid=GO:0005768; evidence=ISS; db_xref=GO_REF:0000001; with=UniProtKB:; date=20120604" /GO="aspect=P; term=endocytic recycling; GOid=GO:0032456; evidence=ISS; db_xref=GO_REF:0000001; with=SGD:S000006104; date=20120604" /systematic_id="SPAC1952.06c" /product="spliceosomal complex subunit (predicted)" /GO="aspect=C; term=spliceosomal complex; GOid=GO:0005681; evidence=ISS; db_xref=GO_REF:0000001; with=UniProtKB:Q8WYA6; date=20121013" /GO="aspect=P; term=mRNA splicing, via spliceosome; GOid=GO:0000398; evidence=IC; db_xref=GO_REF:0000001; from=GO:0005681; date=20121013" /systematic_id="SPBC2G5.01" /GO="aspect=C; term=endoplasmic reticulum; GOid=GO:0005783; evidence=ISS; db_xref=GO_REF:0000001; with=SGD:S000005304; date=20051107" /GO="aspect=P; term=ER-nucleus signaling pathway; GOid=GO:0006984; evidence=ISS; db_xref=GO_REF:0000001; with=MGI:1914413; date=20121013" /colour=7 /product="ER protein involved in unfolded protein response (predicted)" /db_xref="SPD:17/17F11" /systematic_id="SPBC2G5.01" reference only SPBC1703.03c /GO="aspect=P; term=ribosomal large subunit biogenesis; GOid=GO:0042273; evidence=ISS; db_xref=GO_REF:0000001; with=SGD:S000002221; date=20121013" /primary_name=lin1 /synonym=snu40 /product="U5 snRNP subunit Snu40" /GO="aspect=C; term=snRNP U5; GOid=GO:0005682; evidence=ISS; db_xref=GO_REF:0000001; with=SGD:S000001199; date=20060802" /GO="aspect=P; term=assembly of spliceosomal tri-snRNP; GOid=GO:0000244; evidence=ISS; db_xref=GO_REF:0000001; with=UniProtKB:O95400; date=20121013" /GO="aspect=C; term=U5 snRNP; GOid=GO:0005682; evidence=ISS; db_xref=GO_REF:0000001; with=UniProtKB:O95400; date=20121013" /primary_name=lin1 /synonym=snu40 /product="U5 snRNP subunit Snu40" /product="cactin, spliceosome complex subunit (predicted)" /systematic_id="SPBC2F12.12c" /GO="aspect=C; term=catalytic step 2 spliceosome; GOid=GO:0071013; evidence=ISS; db_xref=GO_REF:0000001; with=UniProtKB:Q8WUQ7; date=20121013" /GO="aspect=P; term=nuclear mRNA splicing, via spliceosome; GOid=GO:0000398; evidence=ISS; db_xref=GO_REF:0000001; from=GO:0071013; date=20121013" /systematic_id="SPCC18.15" /product="WD repeat protein, involved in diphthamide biosynthesis" /GO="aspect=P; term=endocytic recycling; GOid=GO:0032456; evidence=ISS; db_xref=GO_REF:0000001; with=SGD:S000000450; date=20120703" /GO="aspect=P; term=peptidyl-diphthamide biosynthetic process from peptidyl-histidine; GOid=GO:0017183; evidence=ISS; db_xref=GO_REF:0000001; with=SGD:S000000450; date=20120703" /primary_name="rtt10" /systematic_id="SPBC1306.02" /product="WD repeat protein, human WDR6 family, involved in endocytic recycling" /synonym="SPBC4.08" /controlled_curation="term=phenotype, viable; allele=deletion; db_xref=PMID:20473289; cv=phenotype; date=20100406" /GO="aspect=C; term=endosome; GOid=GO:0005768; evidence=ISS; db_xref=GO_REF:0000001; with=UniProtKB:; date=20120604" /GO="aspect=P; term=endocytic recycling; GOid=GO:0032456; evidence=ISS; db_xref=GO_REF:0000001; with=SGD:S000006104; date=20120604" /systematic_id="SPAC1952.06c" /product="spliceosomal complex subunit (predicted)" /GO="aspect=C; term=spliceosomal complex; GOid=GO:0005681; evidence=ISS; db_xref=GO_REF:0000001; with=UniProtKB:Q8WYA6; date=20121013" /GO="aspect=P; term=mRNA splicing, via spliceosome; GOid=GO:0000398; evidence=IC; db_xref=GO_REF:0000001; from=GO:0005681; date=20121013" /systematic_id="SPBC2G5.01" /GO="aspect=C; term=endoplasmic reticulum; GOid=GO:0005783; evidence=ISS; db_xref=GO_REF:0000001; with=SGD:S000005304; date=20051107" /GO="aspect=P; term=ER-nucleus signaling pathway; GOid=GO:0006984; evidence=ISS; db_xref=GO_REF:0000001; with=MGI:1914413; date=20121013" /colour=7 /product="ER protein involved in unfolded protein response (predicted)" /db_xref="SPD:17/17F11" /systematic_id="SPBC2G5.01" ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=2096421&aid=3577859&group_id=65526 |