Controlled vocabulary item #3232346, was opened at 2011-03-21 15:44
Message generated for change (Comment added) made by val_wood
You can respond by visiting:
https://sourceforge.net/tracker/?func=detail&atid=2096378&aid=3232346&group_id=65526
Please note that this message will contain a full copy of the comment thread,
including the initial issue submission, for this request,
not just the latest update.
Category: None
Group: None
Status: Open
>Resolution: Out of Date
Priority: 4
Private: No
Submitted By: Midori Harris (gomidori)
Assigned to: Valerie Wood (val_wood)
Summary: Post translational modifications, move to ontology
Initial Comment:
I had a tracker item to standardise the post-translational modification annotation (Which I think I have pretty much done, see
below), so these are probably ready to map to an ontology.
I was intending to do this as my "obo edit" training exercise, so you can issign this issue to me. I might pass it to Antonia and
do something else as I think this is pretty straightforward.
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+acetylated modification, acetylated] (11)
from trac ticket:
https://sourceforge.net/apps/trac/pombase/ticket/2
----------------------------------------------------------------------
>Comment By: Valerie Wood (val_wood)
Date: 2011-04-19 10:08
Message:
Now using MOD, not relevant for OBO edit exercise
----------------------------------------------------------------------
Comment By: Midori Harris (gomidori)
Date: 2011-03-21 15:45
Message:
complete list:
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+acetylated
modification, acetylated] (11)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+biotinylated
modification, biotinylated] (2)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+carboxymethylated
modification, carboxymethylated] (1)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+disulphide+bond
modification, disulphide bond] (2)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+farnesylated
modification, farnesylated] (10)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+gerenylgerenylated
modification, gerenylgerenylated] (3) correct spelling
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+glycosylated
modification, glycosylated] (84)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+GPI+attachment+site
modification, GPI attachment site] (42)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+hypusination
modification, hypusination] (1)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+lipidated
modification, lipidated] (1)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+lipoylated
modification, lipoylated] (4)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+mannosylated
modification, mannosylated] (1)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+methylated
modification, methylated] (10)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+N-myristoylated
modification, N-myristoylated] (2)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+neddylated
modification, neddylated] (3)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+palmitoylated
modification, palmitoylated] (3)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+phosphatidylethanolominated
modification, phosphatidylethanolominated] (1) correct spelling
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+phosphopantetheine+attachment+site
modification, phosphopantetheine attachment site] (1)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+phosphorylated
modification, phosphorylated] (1254)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+prenylated
modification, prenylated] (4)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+proteolytic+cleavage
modification, proteolytic cleavage] (11)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+RNA+trimethylguanosine+capped
modification, trimethylguanosine capped] (1)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+S-thiolated
S-thiolated] (1)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+sulfinic+acid+formation
modification, sulfinic acid formation] (1)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+sumoylated
modification, sumoylated] (8)
[http://old.genedb.org/genedb/Curation?organism=pombe&action=search&search=modification%2C+ubiquitinated
modification, ubiquitinated] (18)
----------------------------------------------------------------------
You can respond by visiting:
https://sourceforge.net/tracker/?func=detail&atid=2096378&aid=3232346&group_id=65526
|
